Gene loci information

Transcript annotation

  • This transcript has been annotated as Cytochrome P450 9e2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13580 g13580.t18 TSS g13580.t18 31040681 31040681
chr_1 g13580 g13580.t18 isoform g13580.t18 31040873 31042954
chr_1 g13580 g13580.t18 exon g13580.t18.exon1 31040873 31041072
chr_1 g13580 g13580.t18 cds g13580.t18.CDS1 31040873 31041072
chr_1 g13580 g13580.t18 exon g13580.t18.exon2 31041192 31041391
chr_1 g13580 g13580.t18 cds g13580.t18.CDS2 31041192 31041391
chr_1 g13580 g13580.t18 exon g13580.t18.exon3 31041615 31041781
chr_1 g13580 g13580.t18 cds g13580.t18.CDS3 31041615 31041781
chr_1 g13580 g13580.t18 exon g13580.t18.exon4 31041837 31042235
chr_1 g13580 g13580.t18 cds g13580.t18.CDS4 31041837 31042235
chr_1 g13580 g13580.t18 exon g13580.t18.exon5 31042300 31042714
chr_1 g13580 g13580.t18 cds g13580.t18.CDS5 31042300 31042714
chr_1 g13580 g13580.t18 exon g13580.t18.exon6 31042767 31042954
chr_1 g13580 g13580.t18 cds g13580.t18.CDS6 31042767 31042954
chr_1 g13580 g13580.t18 TTS g13580.t18 31043048 31043048

Sequences

>g13580.t18 Gene=g13580 Length=1569
ATGTTTATATGGTTTTTATTAATTGTGGCACTTGTTGCTTTGTATAAATATGGCACACGT
AATTTTGATTATTTCCGAGCTAAAGGTGTGCCTTTTAATAAACCAAGATTCTTTGTTGGA
AGTAGATTAGGAATGGTTTTAAAAACAAGCAATATGATTGAATTTGTTGAAGAAATTTAC
AATGAATTTAGAAATGAAAAAGTATCAGGAATGTTTGAATTTAATCACCCGGCATTTTTC
ATTCGTGACCCTGAACTCATTAAAAAATTGGCAGTTAAAGAATTTGATTCATTTATGGAT
CATCGTCTTGTTTTATCAGAAGATGCAGAACCATTATTCGCCAAAGCTCTTTTTGGTTTG
ACTGGTCAAAAATGGAAAGGTAAAAAAAATATTTCATTATGCTCGAAGATGCGCTTAATG
TTCAAATTGATGAATGAAGTGGGATCGAAAATGTCGAAGACTGTTTGTGATAAAATCAAT
AAAGGCGCAGACAATAAAGTTGAATTTAAAGAGTTCTCGAGAAAATTCACGATTGATATA
ATAGCAACTTGTGCATTTGGCATTGAAGTTAATTCATTTGAAAATGCAAATAATGACTTC
ATGAGAATTGCAACAAAAGCTACAAACTTTAATTCTTCAGGAATGCTTCTTAAATTGATT
GGATTTTTTGGATTTCCATGGTTGATGAGTCGATTAAGAGTAAAATTTTTAGATAGTGAA
CTTTACGACTTTTTCGATAATGTCATTACTGAAACAATTAACACAAGAGAACGAAAAGAA
ATTACTCGAAATGACATGATTGATTTACTTTTGCAAGCAAAACATGGAAAGCTTGAATAT
CAAGAAGAAAAATCATCATCTGATGGATTTGCTACTGTTGAAGAATCACAAATTGGAAAA
CAAAAAGTCAAAACTGTCTGGAGCAACCAAGACTTGATGGCTCAATGTTTTATCTTCTTC
TTTGCTGGTTTCGAAACAGTTTCAAATGTGATGACCTTTATGGCATATGAACTCATTCTC
AATCCTGATATTCAAAAGAAATTGCAAGATGAAATTGATGCAATGAATGCTGAACTCAAA
GGAGGTGATTTGACTTATGAAGATGTTCAGAAACTAAAATATATGGATATGGTACTTTGT
GAAACTTTGAGAATGTGGCCACCAGCTCCTATCATTGATAGAATGTGTACAAAAGATTTT
CTCTTGGAATATGACAACAAAAAAGTTCAAATTGAAGTTGGCAGAAATTTCTATATTCCT
GTCTATTCTTTGCATCATAACGAAAACTACTTTCCAAATCCGAATAGATTTGATCCAGAA
CGTTTCAGTGATGAAAACAAGAAAAACATCAGACAGGATTGTTATTTACCTTTTGGAATT
GGTCCAAGGAATTGCATCGGAAATCGTTTCGCTTTACTTGAAGTCAAGACAATCTTCTAT
TATCTTCTTTTGAATTTTAATTTTGAAGCAACAAAGGACACACAAATTCCAATTAAATTG
GCAAACAATCAAGCTACTTTCCAATTCGAGAAGGGCTTGCATTGCGCATTAGTTCCAAGA
ACAAAATAA

>g13580.t18 Gene=g13580 Length=522
MFIWFLLIVALVALYKYGTRNFDYFRAKGVPFNKPRFFVGSRLGMVLKTSNMIEFVEEIY
NEFRNEKVSGMFEFNHPAFFIRDPELIKKLAVKEFDSFMDHRLVLSEDAEPLFAKALFGL
TGQKWKGKKNISLCSKMRLMFKLMNEVGSKMSKTVCDKINKGADNKVEFKEFSRKFTIDI
IATCAFGIEVNSFENANNDFMRIATKATNFNSSGMLLKLIGFFGFPWLMSRLRVKFLDSE
LYDFFDNVITETINTRERKEITRNDMIDLLLQAKHGKLEYQEEKSSSDGFATVEESQIGK
QKVKTVWSNQDLMAQCFIFFFAGFETVSNVMTFMAYELILNPDIQKKLQDEIDAMNAELK
GGDLTYEDVQKLKYMDMVLCETLRMWPPAPIIDRMCTKDFLLEYDNKKVQIEVGRNFYIP
VYSLHHNENYFPNPNRFDPERFSDENKKNIRQDCYLPFGIGPRNCIGNRFALLEVKTIFY
YLLLNFNFEATKDTQIPIKLANNQATFQFEKGLHCALVPRTK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g13580.t18 Gene3D G3DSA:1.10.630.10 Cytochrome p450 13 522 2.3E-122
2 g13580.t18 PANTHER PTHR24292 CYTOCHROME P450 12 505 4.6E-175
3 g13580.t18 PANTHER PTHR24292:SF90 CYTOCHROME P450 317A1-RELATED 12 505 4.6E-175
4 g13580.t18 PRINTS PR00463 E-class P450 group I signature 311 328 9.4E-22
12 g13580.t18 PRINTS PR00385 P450 superfamily signature 322 339 6.4E-11
6 g13580.t18 PRINTS PR00463 E-class P450 group I signature 331 357 9.4E-22
9 g13580.t18 PRINTS PR00385 P450 superfamily signature 377 388 6.4E-11
5 g13580.t18 PRINTS PR00463 E-class P450 group I signature 420 444 9.4E-22
8 g13580.t18 PRINTS PR00463 E-class P450 group I signature 455 465 9.4E-22
10 g13580.t18 PRINTS PR00385 P450 superfamily signature 456 465 6.4E-11
7 g13580.t18 PRINTS PR00463 E-class P450 group I signature 465 488 9.4E-22
11 g13580.t18 PRINTS PR00385 P450 superfamily signature 465 476 6.4E-11
1 g13580.t18 Pfam PF00067 Cytochrome P450 35 506 1.9E-76
17 g13580.t18 Phobius SIGNAL_PEPTIDE Signal peptide region 1 18 -
18 g13580.t18 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 2 -
19 g13580.t18 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 3 14 -
20 g13580.t18 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 15 18 -
16 g13580.t18 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 19 522 -
21 g13580.t18 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 458 467 -
13 g13580.t18 SUPERFAMILY SSF48264 Cytochrome P450 31 520 1.44E-103
14 g13580.t18 SignalP_EUK SignalP-noTM SignalP-noTM 1 21 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed