Gene loci information

Transcript annotation

  • This transcript has been annotated as Cytochrome P450 9e2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13580 g13580.t19 TSS g13580.t19 31040681 31040681
chr_1 g13580 g13580.t19 isoform g13580.t19 31040873 31042954
chr_1 g13580 g13580.t19 exon g13580.t19.exon1 31040873 31041072
chr_1 g13580 g13580.t19 exon g13580.t19.exon2 31041192 31041370
chr_1 g13580 g13580.t19 exon g13580.t19.exon3 31041434 31041781
chr_1 g13580 g13580.t19 cds g13580.t19.CDS1 31041623 31041781
chr_1 g13580 g13580.t19 exon g13580.t19.exon4 31041837 31042235
chr_1 g13580 g13580.t19 cds g13580.t19.CDS2 31041837 31042235
chr_1 g13580 g13580.t19 exon g13580.t19.exon5 31042300 31042714
chr_1 g13580 g13580.t19 cds g13580.t19.CDS3 31042300 31042714
chr_1 g13580 g13580.t19 exon g13580.t19.exon6 31042767 31042954
chr_1 g13580 g13580.t19 cds g13580.t19.CDS4 31042767 31042954
chr_1 g13580 g13580.t19 TTS g13580.t19 31043048 31043048

Sequences

>g13580.t19 Gene=g13580 Length=1729
ATGTTTATATGGTTTTTATTAATTGTGGCACTTGTTGCTTTGTATAAATATGGCACACGT
AATTTTGATTATTTCCGAGCTAAAGGTGTGCCTTTTAATAAACCAAGATTCTTTGTTGGA
AGTAGATTAGGAATGGTTTTAAAAACAAGCAATATGATTGAATTTGTTGAAGAAATTTAC
AATGAATTTAGAAATGAAAAAGTATCAGGAATGTTTGAATTTAATCACCCGGCATTTTTC
ATTCGTGACCCTGAACTCATTAAAAAATTGGCAGTTAAAGAATTTGATTCATTTATGGAT
CATCGTCTTGTTTTATCAGAAGATGCAGAACCATTATTCGCCAAAGCTCTTTTTGGTTTG
ACTGGTCAAAAATGGAAAGATATGAGAGCTACATTGTCTCCTGCATTCACTGGTATGAAA
TATGATCACATCAAAAAGTTTTAAAAAAACTTCTATGCGTAAAAATTTAACCTTGAAGAT
AATTAAAGTCATAAAAACCGGTTTTTCATTCTAATGATTTTTCTCAGACGCTAATGACTT
TCCTAATTTAAACTAAACAGGCTCGAAGATGCGCTTAATGTTCAAATTGATGAATGAAGT
GGGATCGAAAATGTCGAAGACTGTTTGTGATAAAATCAATAAAGGCGCAGACAATAAAGT
TGAATTTAAAGAGTTCTCGAGAAAATTCACGATTGATATAATAGCAACTTGTGCATTTGG
CATTGAAGTTAATTCATTTGAAAATGCAAATAATGACTTCATGAGAATTGCAACAAAAGC
TACAAACTTTAATTCTTCAGGAATGCTTCTTAAATTGATTGGATTTTTTGGATTTCCATG
GTTGATGAGTCGATTAAGAGTAAAATTTTTAGATAGTGAACTTTACGACTTTTTCGATAA
TGTCATTACTGAAACAATTAACACAAGAGAACGAAAAGAAATTACTCGAAATGACATGAT
TGATTTACTTTTGCAAGCAAAACATGGAAAGCTTGAATATCAAGAAGAAAAATCATCATC
TGATGGATTTGCTACTGTTGAAGAATCACAAATTGGAAAACAAAAAGTCAAAACTGTCTG
GAGCAACCAAGACTTGATGGCTCAATGTTTTATCTTCTTCTTTGCTGGTTTCGAAACAGT
TTCAAATGTGATGACCTTTATGGCATATGAACTCATTCTCAATCCTGATATTCAAAAGAA
ATTGCAAGATGAAATTGATGCAATGAATGCTGAACTCAAAGGAGGTGATTTGACTTATGA
AGATGTTCAGAAACTAAAATATATGGATATGGTACTTTGTGAAACTTTGAGAATGTGGCC
ACCAGCTCCTATCATTGATAGAATGTGTACAAAAGATTTTCTCTTGGAATATGACAACAA
AAAAGTTCAAATTGAAGTTGGCAGAAATTTCTATATTCCTGTCTATTCTTTGCATCATAA
CGAAAACTACTTTCCAAATCCGAATAGATTTGATCCAGAACGTTTCAGTGATGAAAACAA
GAAAAACATCAGACAGGATTGTTATTTACCTTTTGGAATTGGTCCAAGGAATTGCATCGG
AAATCGTTTCGCTTTACTTGAAGTCAAGACAATCTTCTATTATCTTCTTTTGAATTTTAA
TTTTGAAGCAACAAAGGACACACAAATTCCAATTAAATTGGCAAACAATCAAGCTACTTT
CCAATTCGAGAAGGGCTTGCATTGCGCATTAGTTCCAAGAACAAAATAA

>g13580.t19 Gene=g13580 Length=386
MRLMFKLMNEVGSKMSKTVCDKINKGADNKVEFKEFSRKFTIDIIATCAFGIEVNSFENA
NNDFMRIATKATNFNSSGMLLKLIGFFGFPWLMSRLRVKFLDSELYDFFDNVITETINTR
ERKEITRNDMIDLLLQAKHGKLEYQEEKSSSDGFATVEESQIGKQKVKTVWSNQDLMAQC
FIFFFAGFETVSNVMTFMAYELILNPDIQKKLQDEIDAMNAELKGGDLTYEDVQKLKYMD
MVLCETLRMWPPAPIIDRMCTKDFLLEYDNKKVQIEVGRNFYIPVYSLHHNENYFPNPNR
FDPERFSDENKKNIRQDCYLPFGIGPRNCIGNRFALLEVKTIFYYLLLNFNFEATKDTQI
PIKLANNQATFQFEKGLHCALVPRTK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g13580.t19 Gene3D G3DSA:1.10.630.10 Cytochrome p450 1 386 1.7E-104
2 g13580.t19 PANTHER PTHR24292 CYTOCHROME P450 1 369 6.3E-145
3 g13580.t19 PANTHER PTHR24292:SF90 CYTOCHROME P450 317A1-RELATED 1 369 6.3E-145
8 g13580.t19 PRINTS PR00463 E-class P450 group I signature 175 192 2.6E-22
9 g13580.t19 PRINTS PR00385 P450 superfamily signature 186 203 2.2E-11
7 g13580.t19 PRINTS PR00463 E-class P450 group I signature 195 221 2.6E-22
12 g13580.t19 PRINTS PR00385 P450 superfamily signature 241 252 2.2E-11
4 g13580.t19 PRINTS PR00463 E-class P450 group I signature 284 308 2.6E-22
5 g13580.t19 PRINTS PR00463 E-class P450 group I signature 319 329 2.6E-22
11 g13580.t19 PRINTS PR00385 P450 superfamily signature 320 329 2.2E-11
6 g13580.t19 PRINTS PR00463 E-class P450 group I signature 329 352 2.6E-22
10 g13580.t19 PRINTS PR00385 P450 superfamily signature 329 340 2.2E-11
1 g13580.t19 Pfam PF00067 Cytochrome P450 7 370 6.5E-71
16 g13580.t19 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 73 -
19 g13580.t19 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 74 93 -
17 g13580.t19 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 94 175 -
18 g13580.t19 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 176 203 -
15 g13580.t19 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 204 386 -
21 g13580.t19 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 322 331 -
13 g13580.t19 SUPERFAMILY SSF48264 Cytochrome P450 2 384 1.7E-92
20 g13580.t19 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 71 93 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed