Gene loci information

Transcript annotation

  • This transcript has been annotated as Cytochrome P450 9e2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13580 g13580.t20 TSS g13580.t20 31040681 31040681
chr_1 g13580 g13580.t20 isoform g13580.t20 31040873 31042954
chr_1 g13580 g13580.t20 exon g13580.t20.exon1 31040873 31041370
chr_1 g13580 g13580.t20 cds g13580.t20.CDS1 31041202 31041370
chr_1 g13580 g13580.t20 exon g13580.t20.exon2 31041434 31041466
chr_1 g13580 g13580.t20 cds g13580.t20.CDS2 31041434 31041466
chr_1 g13580 g13580.t20 exon g13580.t20.exon3 31041615 31041781
chr_1 g13580 g13580.t20 cds g13580.t20.CDS3 31041615 31041781
chr_1 g13580 g13580.t20 exon g13580.t20.exon4 31041837 31042235
chr_1 g13580 g13580.t20 cds g13580.t20.CDS4 31041837 31042235
chr_1 g13580 g13580.t20 exon g13580.t20.exon5 31042300 31042714
chr_1 g13580 g13580.t20 cds g13580.t20.CDS5 31042300 31042714
chr_1 g13580 g13580.t20 exon g13580.t20.exon6 31042767 31042954
chr_1 g13580 g13580.t20 cds g13580.t20.CDS6 31042767 31042954
chr_1 g13580 g13580.t20 TTS g13580.t20 31043048 31043048

Sequences

>g13580.t20 Gene=g13580 Length=1700
ATGTTTATATGGTTTTTATTAATTGTGGCACTTGTTGCTTTGTATAAATATGGCACACGT
AATTTTGATTATTTCCGAGCTAAAGGTGTGCCTTTTAATAAACCAAGATTCTTTGTTGGA
AGTAGATTAGGAATGGTTTTAAAAACAAGCAATATGATTGAATTTGTTGAAGAAATTTAC
AATGAATTTAGAAATGAAAAGTAAGTTGCAATATTTCGTATTTATTCTGCAATTGTTATG
TTAATTTACGTAATGAAAAGATAAGCAAAAAACGTGACTTAATTCCACTGAATTAAAAAA
AAATTTATTTTAATCACAGAGTATCAGGAATGTTTGAATTTAATCACCCGGCATTTTTCA
TTCGTGACCCTGAACTCATTAAAAAATTGGCAGTTAAAGAATTTGATTCATTTATGGATC
ATCGTCTTGTTTTATCAGAAGATGCAGAACCATTATTCGCCAAAGCTCTTTTTGGTTTGA
CTGGTCAAAAATGGAAAGATATGAGAGCTACATTGTCTCCTGCATTCACTGGCTCGAAGA
TGCGCTTAATGTTCAAATTGATGAATGAAGTGGGATCGAAAATGTCGAAGACTGTTTGTG
ATAAAATCAATAAAGGCGCAGACAATAAAGTTGAATTTAAAGAGTTCTCGAGAAAATTCA
CGATTGATATAATAGCAACTTGTGCATTTGGCATTGAAGTTAATTCATTTGAAAATGCAA
ATAATGACTTCATGAGAATTGCAACAAAAGCTACAAACTTTAATTCTTCAGGAATGCTTC
TTAAATTGATTGGATTTTTTGGATTTCCATGGTTGATGAGTCGATTAAGAGTAAAATTTT
TAGATAGTGAACTTTACGACTTTTTCGATAATGTCATTACTGAAACAATTAACACAAGAG
AACGAAAAGAAATTACTCGAAATGACATGATTGATTTACTTTTGCAAGCAAAACATGGAA
AGCTTGAATATCAAGAAGAAAAATCATCATCTGATGGATTTGCTACTGTTGAAGAATCAC
AAATTGGAAAACAAAAAGTCAAAACTGTCTGGAGCAACCAAGACTTGATGGCTCAATGTT
TTATCTTCTTCTTTGCTGGTTTCGAAACAGTTTCAAATGTGATGACCTTTATGGCATATG
AACTCATTCTCAATCCTGATATTCAAAAGAAATTGCAAGATGAAATTGATGCAATGAATG
CTGAACTCAAAGGAGGTGATTTGACTTATGAAGATGTTCAGAAACTAAAATATATGGATA
TGGTACTTTGTGAAACTTTGAGAATGTGGCCACCAGCTCCTATCATTGATAGAATGTGTA
CAAAAGATTTTCTCTTGGAATATGACAACAAAAAAGTTCAAATTGAAGTTGGCAGAAATT
TCTATATTCCTGTCTATTCTTTGCATCATAACGAAAACTACTTTCCAAATCCGAATAGAT
TTGATCCAGAACGTTTCAGTGATGAAAACAAGAAAAACATCAGACAGGATTGTTATTTAC
CTTTTGGAATTGGTCCAAGGAATTGCATCGGAAATCGTTTCGCTTTACTTGAAGTCAAGA
CAATCTTCTATTATCTTCTTTTGAATTTTAATTTTGAAGCAACAAAGGACACACAAATTC
CAATTAAATTGGCAAACAATCAAGCTACTTTCCAATTCGAGAAGGGCTTGCATTGCGCAT
TAGTTCCAAGAACAAAATAA

>g13580.t20 Gene=g13580 Length=456
MFEFNHPAFFIRDPELIKKLAVKEFDSFMDHRLVLSEDAEPLFAKALFGLTGQKWKDMRA
TLSPAFTGSKMRLMFKLMNEVGSKMSKTVCDKINKGADNKVEFKEFSRKFTIDIIATCAF
GIEVNSFENANNDFMRIATKATNFNSSGMLLKLIGFFGFPWLMSRLRVKFLDSELYDFFD
NVITETINTRERKEITRNDMIDLLLQAKHGKLEYQEEKSSSDGFATVEESQIGKQKVKTV
WSNQDLMAQCFIFFFAGFETVSNVMTFMAYELILNPDIQKKLQDEIDAMNAELKGGDLTY
EDVQKLKYMDMVLCETLRMWPPAPIIDRMCTKDFLLEYDNKKVQIEVGRNFYIPVYSLHH
NENYFPNPNRFDPERFSDENKKNIRQDCYLPFGIGPRNCIGNRFALLEVKTIFYYLLLNF
NFEATKDTQIPIKLANNQATFQFEKGLHCALVPRTK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g13580.t20 Gene3D G3DSA:1.10.630.10 Cytochrome p450 1 456 9.0E-124
2 g13580.t20 PANTHER PTHR24292 CYTOCHROME P450 1 439 5.6E-181
3 g13580.t20 PANTHER PTHR24292:SF90 CYTOCHROME P450 317A1-RELATED 1 439 5.6E-181
6 g13580.t20 PRINTS PR00463 E-class P450 group I signature 245 262 5.2E-22
12 g13580.t20 PRINTS PR00385 P450 superfamily signature 256 273 4.0E-11
4 g13580.t20 PRINTS PR00463 E-class P450 group I signature 265 291 5.2E-22
11 g13580.t20 PRINTS PR00385 P450 superfamily signature 311 322 4.0E-11
8 g13580.t20 PRINTS PR00463 E-class P450 group I signature 354 378 5.2E-22
5 g13580.t20 PRINTS PR00463 E-class P450 group I signature 389 399 5.2E-22
10 g13580.t20 PRINTS PR00385 P450 superfamily signature 390 399 4.0E-11
7 g13580.t20 PRINTS PR00463 E-class P450 group I signature 399 422 5.2E-22
9 g13580.t20 PRINTS PR00385 P450 superfamily signature 399 410 4.0E-11
1 g13580.t20 Pfam PF00067 Cytochrome P450 5 440 8.4E-81
17 g13580.t20 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 143 -
20 g13580.t20 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 144 163 -
18 g13580.t20 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 164 245 -
19 g13580.t20 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 246 273 -
16 g13580.t20 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 274 456 -
14 g13580.t20 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 392 401 -
13 g13580.t20 SUPERFAMILY SSF48264 Cytochrome P450 4 454 2.1E-106

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

Pathway

This gene does not belong to any pathways.

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values