General information for g13580.t22
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g13580 is located on chr_1: 31042311..31047040 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13580 | g13580.t22 | TSS | g13580.t22 | 31040681 | 31040681 |
| chr_1 | g13580 | g13580.t22 | isoform | g13580.t22 | 31041220 | 31042754 |
| chr_1 | g13580 | g13580.t22 | exon | g13580.t22.exon1 | 31041220 | 31042754 |
| chr_1 | g13580 | g13580.t22 | cds | g13580.t22.CDS1 | 31041870 | 31042262 |
| chr_1 | g13580 | g13580.t22 | TTS | g13580.t22 | 31043048 | 31043048 |
Sequences
>g13580.t22 Gene=g13580 Length=1535
CCGGCATTTTTCATTCGTGACCCTGAACTCATTAAAAAATTGGCAGTTAAAGAATTTGAT
TCATTTATGGATCATCGTCTTGTTTTATCAGAAGATGCAGAACCATTATTCGCCAAAGCT
CTTTTTGGTTTGACTGGTCAAAAATGGAAAGGTAAAAAAAATATTTCATTATGTAAATAA
TCAACAAAAATGACCAAGCATATTTTTACGACAGATATGAGAGCTACATTGTCTCCTGCA
TTCACTGGTATGAAATATGATCACATCAAAAAGTTTTAAAAAAACTTCTATGCGTAAAAA
TTTAACCTTGAAGATAATTAAAGTCATAAAAACCGGTTTTTCATTCTAATGATTTTTCTC
AGACGCTAATGACTTTCCTAATTTAAACTAAACAGGCTCGAAGATGCGCTTAATGTTCAA
ATTGATGAATGAAGTGGGATCGAAAATGTCGAAGACTGTTTGTGATAAAATCAATAAAGG
CGCAGACAATAAAGTTGAATTTAAAGAGTTCTCGAGAAAATTCACGATTGATATAATAGC
AACTTGTGCATTTGGCATTGAAGTATGATGATAAAAAATTTTAATTACTATTTAACTTAA
TTTATCTACTCAAATAGGTTAATTCATTTGAAAATGCAAATAATGACTTCATGAGAATTG
CAACAAAAGCTACAAACTTTAATTCTTCAGGAATGCTTCTTAAATTGATTGGATTTTTTG
GATTTCCATGGTTGATGAGTCGATTAAGAGTAAAATTTTTAGATAGTGAACTTTACGACT
TTTTCGATAATGTCATTACTGAAACAATTAACACAAGAGAACGAAAAGAAATTACTCGAA
ATGACATGATTGATTTACTTTTGCAAGCAAAACATGGAAAGCTTGAATATCAAGAAGAAA
AATCATCATCTGATGGATTTGCTACTGTTGAAGAATCACAAATTGGAAAACAAAAAGTCA
AAACTGTCTGGAGCAACCAAGACTTGATGGCTCAATGTTTTATCTTCTTCTTTGCTGTAA
ATTTTATTTTTTTAATTTCATGAATTTTGAACTGATTAAATTTATTTCATCAATAAACAG
GGTTTCGAAACAGTTTCAAATGTGATGACCTTTATGGCATATGAACTCATTCTCAATCCT
GATATTCAAAAGAAATTGCAAGATGAAATTGATGCAATGAATGCTGAACTCAAAGGAGGT
GATTTGACTTATGAAGATGTTCAGAAACTAAAATATATGGATATGGTACTTTGTGAAACT
TTGAGAATGTGGCCACCAGCTCCTATCATTGATAGAATGTGTACAAAAGATTTTCTCTTG
GAATATGACAACAAAAAAGTTCAAATTGAAGTTGGCAGAAATTTCTATATTCCTGTCTAT
TCTTTGCATCATAACGAAAACTACTTTCCAAATCCGAATAGATTTGATCCAGAACGTTTC
AGTGATGAAAACAAGAAAAACATCAGACAGGATTGTTATTTACCTTTTGGAATTGGTGAG
CAATTTAAAATAAAAATAAATAATTTTTTATTAAA
>g13580.t22 Gene=g13580 Length=130
MRIATKATNFNSSGMLLKLIGFFGFPWLMSRLRVKFLDSELYDFFDNVITETINTRERKE
ITRNDMIDLLLQAKHGKLEYQEEKSSSDGFATVEESQIGKQKVKTVWSNQDLMAQCFIFF
FAVNFIFLIS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g13580.t22 | Gene3D | G3DSA:1.10.630.10 | Cytochrome p450 | 1 | 123 | 7.4E-8 |
| 1 | g13580.t22 | PANTHER | PTHR24292 | CYTOCHROME P450 | 4 | 122 | 1.3E-25 |
| 2 | g13580.t22 | PANTHER | PTHR24292:SF90 | CYTOCHROME P450 317A1-RELATED | 4 | 122 | 1.3E-25 |
| 7 | g13580.t22 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 11 | - |
| 10 | g13580.t22 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 12 | 29 | - |
| 9 | g13580.t22 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 30 | 111 | - |
| 11 | g13580.t22 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 112 | 129 | - |
| 8 | g13580.t22 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 130 | 130 | - |
| 5 | g13580.t22 | SUPERFAMILY | SSF48264 | Cytochrome P450 | 15 | 122 | 2.33E-7 |
| 3 | g13580.t22 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 7 | 29 | - |
| 4 | g13580.t22 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 112 | 129 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0020037 | heme binding | MF |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | MF |
| GO:0005506 | iron ion binding | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
