General information for g13580.t25
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Cytochrome P450 9e2.
Parent gene
- The parent gene g13580 is located on chr_1: 31042311..31047040 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13580 | g13580.t25 | TSS | g13580.t25 | 31040681 | 31040681 |
| chr_1 | g13580 | g13580.t25 | isoform | g13580.t25 | 31041613 | 31042954 |
| chr_1 | g13580 | g13580.t25 | exon | g13580.t25.exon1 | 31041613 | 31041781 |
| chr_1 | g13580 | g13580.t25 | exon | g13580.t25.exon2 | 31041889 | 31042235 |
| chr_1 | g13580 | g13580.t25 | cds | g13580.t25.CDS1 | 31041912 | 31042235 |
| chr_1 | g13580 | g13580.t25 | exon | g13580.t25.exon3 | 31042300 | 31042714 |
| chr_1 | g13580 | g13580.t25 | cds | g13580.t25.CDS2 | 31042300 | 31042714 |
| chr_1 | g13580 | g13580.t25 | exon | g13580.t25.exon4 | 31042767 | 31042954 |
| chr_1 | g13580 | g13580.t25 | cds | g13580.t25.CDS3 | 31042767 | 31042954 |
| chr_1 | g13580 | g13580.t25 | TTS | g13580.t25 | 31043048 | 31043048 |
Sequences
>g13580.t25 Gene=g13580 Length=1119
AGGCTCGAAGATGCGCTTAATGTTCAAATTGATGAATGAAGTGGGATCGAAAATGTCGAA
GACTGTTTGTGATAAAATCAATAAAGGCGCAGACAATAAAGTTGAATTTAAAGAGTTCTC
GAGAAAATTCACGATTGATATAATAGCAACTTGTGCATTTGGCATTGAACTACAAACTTT
AATTCTTCAGGAATGCTTCTTAAATTGATTGGATTTTTTGGATTTCCATGGTTGATGAGT
CGATTAAGAGTAAAATTTTTAGATAGTGAACTTTACGACTTTTTCGATAATGTCATTACT
GAAACAATTAACACAAGAGAACGAAAAGAAATTACTCGAAATGACATGATTGATTTACTT
TTGCAAGCAAAACATGGAAAGCTTGAATATCAAGAAGAAAAATCATCATCTGATGGATTT
GCTACTGTTGAAGAATCACAAATTGGAAAACAAAAAGTCAAAACTGTCTGGAGCAACCAA
GACTTGATGGCTCAATGTTTTATCTTCTTCTTTGCTGGTTTCGAAACAGTTTCAAATGTG
ATGACCTTTATGGCATATGAACTCATTCTCAATCCTGATATTCAAAAGAAATTGCAAGAT
GAAATTGATGCAATGAATGCTGAACTCAAAGGAGGTGATTTGACTTATGAAGATGTTCAG
AAACTAAAATATATGGATATGGTACTTTGTGAAACTTTGAGAATGTGGCCACCAGCTCCT
ATCATTGATAGAATGTGTACAAAAGATTTTCTCTTGGAATATGACAACAAAAAAGTTCAA
ATTGAAGTTGGCAGAAATTTCTATATTCCTGTCTATTCTTTGCATCATAACGAAAACTAC
TTTCCAAATCCGAATAGATTTGATCCAGAACGTTTCAGTGATGAAAACAAGAAAAACATC
AGACAGGATTGTTATTTACCTTTTGGAATTGGTCCAAGGAATTGCATCGGAAATCGTTTC
GCTTTACTTGAAGTCAAGACAATCTTCTATTATCTTCTTTTGAATTTTAATTTTGAAGCA
ACAAAGGACACACAAATTCCAATTAAATTGGCAAACAATCAAGCTACTTTCCAATTCGAG
AAGGGCTTGCATTGCGCATTAGTTCCAAGAACAAAATAA
>g13580.t25 Gene=g13580 Length=308
MLLKLIGFFGFPWLMSRLRVKFLDSELYDFFDNVITETINTRERKEITRNDMIDLLLQAK
HGKLEYQEEKSSSDGFATVEESQIGKQKVKTVWSNQDLMAQCFIFFFAGFETVSNVMTFM
AYELILNPDIQKKLQDEIDAMNAELKGGDLTYEDVQKLKYMDMVLCETLRMWPPAPIIDR
MCTKDFLLEYDNKKVQIEVGRNFYIPVYSLHHNENYFPNPNRFDPERFSDENKKNIRQDC
YLPFGIGPRNCIGNRFALLEVKTIFYYLLLNFNFEATKDTQIPIKLANNQATFQFEKGLH
CALVPRTK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 15 | g13580.t25 | Gene3D | G3DSA:1.10.630.10 | Cytochrome p450 | 1 | 308 | 5.0E-87 |
| 2 | g13580.t25 | PANTHER | PTHR24292 | CYTOCHROME P450 | 3 | 291 | 1.7E-123 |
| 3 | g13580.t25 | PANTHER | PTHR24292:SF90 | CYTOCHROME P450 317A1-RELATED | 3 | 291 | 1.7E-123 |
| 6 | g13580.t25 | PRINTS | PR00463 | E-class P450 group I signature | 97 | 114 | 1.0E-22 |
| 9 | g13580.t25 | PRINTS | PR00385 | P450 superfamily signature | 108 | 125 | 1.1E-11 |
| 5 | g13580.t25 | PRINTS | PR00463 | E-class P450 group I signature | 117 | 143 | 1.0E-22 |
| 11 | g13580.t25 | PRINTS | PR00385 | P450 superfamily signature | 163 | 174 | 1.1E-11 |
| 7 | g13580.t25 | PRINTS | PR00463 | E-class P450 group I signature | 206 | 230 | 1.0E-22 |
| 4 | g13580.t25 | PRINTS | PR00463 | E-class P450 group I signature | 241 | 251 | 1.0E-22 |
| 12 | g13580.t25 | PRINTS | PR00385 | P450 superfamily signature | 242 | 251 | 1.1E-11 |
| 8 | g13580.t25 | PRINTS | PR00463 | E-class P450 group I signature | 251 | 274 | 1.0E-22 |
| 10 | g13580.t25 | PRINTS | PR00385 | P450 superfamily signature | 251 | 262 | 1.1E-11 |
| 1 | g13580.t25 | Pfam | PF00067 | Cytochrome P450 | 26 | 292 | 3.1E-64 |
| 14 | g13580.t25 | ProSitePatterns | PS00086 | Cytochrome P450 cysteine heme-iron ligand signature. | 244 | 253 | - |
| 13 | g13580.t25 | SUPERFAMILY | SSF48264 | Cytochrome P450 | 10 | 306 | 7.86E-81 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0020037 | heme binding | MF |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | MF |
| GO:0005506 | iron ion binding | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed