Gene loci information

Transcript annotation

  • This transcript has been annotated as Cytochrome P450 9e2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13580 g13580.t27 isoform g13580.t27 31041829 31042954
chr_1 g13580 g13580.t27 exon g13580.t27.exon1 31041829 31042235
chr_1 g13580 g13580.t27 cds g13580.t27.CDS1 31041870 31042235
chr_1 g13580 g13580.t27 exon g13580.t27.exon2 31042300 31042714
chr_1 g13580 g13580.t27 cds g13580.t27.CDS2 31042300 31042714
chr_1 g13580 g13580.t27 exon g13580.t27.exon3 31042767 31042954
chr_1 g13580 g13580.t27 cds g13580.t27.CDS3 31042767 31042954
chr_1 g13580 g13580.t27 TTS g13580.t27 31043048 31043048
chr_1 g13580 g13580.t27 TSS g13580.t27 NA NA

Sequences

>g13580.t27 Gene=g13580 Length=1010
TCAAATAGGTTAATTCATTTGAAAATGCAAATAATGACTTCATGAGAATTGCAACAAAAG
CTACAAACTTTAATTCTTCAGGAATGCTTCTTAAATTGATTGGATTTTTTGGATTTCCAT
GGTTGATGAGTCGATTAAGAGTAAAATTTTTAGATAGTGAACTTTACGACTTTTTCGATA
ATGTCATTACTGAAACAATTAACACAAGAGAACGAAAAGAAATTACTCGAAATGACATGA
TTGATTTACTTTTGCAAGCAAAACATGGAAAGCTTGAATATCAAGAAGAAAAATCATCAT
CTGATGGATTTGCTACTGTTGAAGAATCACAAATTGGAAAACAAAAAGTCAAAACTGTCT
GGAGCAACCAAGACTTGATGGCTCAATGTTTTATCTTCTTCTTTGCTGGTTTCGAAACAG
TTTCAAATGTGATGACCTTTATGGCATATGAACTCATTCTCAATCCTGATATTCAAAAGA
AATTGCAAGATGAAATTGATGCAATGAATGCTGAACTCAAAGGAGGTGATTTGACTTATG
AAGATGTTCAGAAACTAAAATATATGGATATGGTACTTTGTGAAACTTTGAGAATGTGGC
CACCAGCTCCTATCATTGATAGAATGTGTACAAAAGATTTTCTCTTGGAATATGACAACA
AAAAAGTTCAAATTGAAGTTGGCAGAAATTTCTATATTCCTGTCTATTCTTTGCATCATA
ACGAAAACTACTTTCCAAATCCGAATAGATTTGATCCAGAACGTTTCAGTGATGAAAACA
AGAAAAACATCAGACAGGATTGTTATTTACCTTTTGGAATTGGTCCAAGGAATTGCATCG
GAAATCGTTTCGCTTTACTTGAAGTCAAGACAATCTTCTATTATCTTCTTTTGAATTTTA
ATTTTGAAGCAACAAAGGACACACAAATTCCAATTAAATTGGCAAACAATCAAGCTACTT
TCCAATTCGAGAAGGGCTTGCATTGCGCATTAGTTCCAAGAACAAAATAA

>g13580.t27 Gene=g13580 Length=322
MRIATKATNFNSSGMLLKLIGFFGFPWLMSRLRVKFLDSELYDFFDNVITETINTRERKE
ITRNDMIDLLLQAKHGKLEYQEEKSSSDGFATVEESQIGKQKVKTVWSNQDLMAQCFIFF
FAGFETVSNVMTFMAYELILNPDIQKKLQDEIDAMNAELKGGDLTYEDVQKLKYMDMVLC
ETLRMWPPAPIIDRMCTKDFLLEYDNKKVQIEVGRNFYIPVYSLHHNENYFPNPNRFDPE
RFSDENKKNIRQDCYLPFGIGPRNCIGNRFALLEVKTIFYYLLLNFNFEATKDTQIPIKL
ANNQATFQFEKGLHCALVPRTK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g13580.t27 Gene3D G3DSA:1.10.630.10 Cytochrome p450 1 322 9.9E-88
2 g13580.t27 PANTHER PTHR24292 CYTOCHROME P450 5 305 2.4E-124
3 g13580.t27 PANTHER PTHR24292:SF90 CYTOCHROME P450 317A1-RELATED 5 305 2.4E-124
7 g13580.t27 PRINTS PR00463 E-class P450 group I signature 111 128 1.2E-22
10 g13580.t27 PRINTS PR00385 P450 superfamily signature 122 139 1.2E-11
8 g13580.t27 PRINTS PR00463 E-class P450 group I signature 131 157 1.2E-22
11 g13580.t27 PRINTS PR00385 P450 superfamily signature 177 188 1.2E-11
5 g13580.t27 PRINTS PR00463 E-class P450 group I signature 220 244 1.2E-22
4 g13580.t27 PRINTS PR00463 E-class P450 group I signature 255 265 1.2E-22
9 g13580.t27 PRINTS PR00385 P450 superfamily signature 256 265 1.2E-11
6 g13580.t27 PRINTS PR00463 E-class P450 group I signature 265 288 1.2E-22
12 g13580.t27 PRINTS PR00385 P450 superfamily signature 265 276 1.2E-11
1 g13580.t27 Pfam PF00067 Cytochrome P450 39 306 3.6E-64
15 g13580.t27 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 11 -
18 g13580.t27 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 12 29 -
17 g13580.t27 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 30 111 -
19 g13580.t27 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 112 139 -
16 g13580.t27 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 140 322 -
21 g13580.t27 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 258 267 -
13 g13580.t27 SUPERFAMILY SSF48264 Cytochrome P450 16 320 3.14E-81
20 g13580.t27 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 7 29 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values