Gene loci information

Transcript annotation

  • This transcript has been annotated as Cytochrome P450 9e2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13580 g13580.t6 TSS g13580.t6 31040681 31040681
chr_1 g13580 g13580.t6 isoform g13580.t6 31040690 31042954
chr_1 g13580 g13580.t6 exon g13580.t6.exon1 31040690 31040703
chr_1 g13580 g13580.t6 exon g13580.t6.exon2 31040764 31041072
chr_1 g13580 g13580.t6 cds g13580.t6.CDS1 31040873 31041072
chr_1 g13580 g13580.t6 exon g13580.t6.exon3 31041192 31041370
chr_1 g13580 g13580.t6 cds g13580.t6.CDS2 31041192 31041370
chr_1 g13580 g13580.t6 exon g13580.t6.exon4 31041434 31041466
chr_1 g13580 g13580.t6 cds g13580.t6.CDS3 31041434 31041466
chr_1 g13580 g13580.t6 exon g13580.t6.exon5 31041615 31041781
chr_1 g13580 g13580.t6 cds g13580.t6.CDS4 31041615 31041781
chr_1 g13580 g13580.t6 exon g13580.t6.exon6 31041837 31042235
chr_1 g13580 g13580.t6 cds g13580.t6.CDS5 31041837 31042235
chr_1 g13580 g13580.t6 exon g13580.t6.exon7 31042300 31042714
chr_1 g13580 g13580.t6 cds g13580.t6.CDS6 31042300 31042714
chr_1 g13580 g13580.t6 exon g13580.t6.exon8 31042767 31042954
chr_1 g13580 g13580.t6 cds g13580.t6.CDS7 31042767 31042954
chr_1 g13580 g13580.t6 TTS g13580.t6 31043048 31043048

Sequences

>g13580.t6 Gene=g13580 Length=1704
AGTGAGACGTTCGCTTCAAAAGATAAGAAGATTTATTCTATCAATTTCGCTTCAATTTGT
TTGTTTTTCATCAAATTTTTCAAGTGCTTGGTTGTTTCTCAAGGTCAAATCAATTGACAT
ATCATGTTTATATGGTTTTTATTAATTGTGGCACTTGTTGCTTTGTATAAATATGGCACA
CGTAATTTTGATTATTTCCGAGCTAAAGGTGTGCCTTTTAATAAACCAAGATTCTTTGTT
GGAAGTAGATTAGGAATGGTTTTAAAAACAAGCAATATGATTGAATTTGTTGAAGAAATT
TACAATGAATTTAGAAATGAAAAAGTATCAGGAATGTTTGAATTTAATCACCCGGCATTT
TTCATTCGTGACCCTGAACTCATTAAAAAATTGGCAGTTAAAGAATTTGATTCATTTATG
GATCATCGTCTTGTTTTATCAGAAGATGCAGAACCATTATTCGCCAAAGCTCTTTTTGGT
TTGACTGGTCAAAAATGGAAAGATATGAGAGCTACATTGTCTCCTGCATTCACTGGCTCG
AAGATGCGCTTAATGTTCAAATTGATGAATGAAGTGGGATCGAAAATGTCGAAGACTGTT
TGTGATAAAATCAATAAAGGCGCAGACAATAAAGTTGAATTTAAAGAGTTCTCGAGAAAA
TTCACGATTGATATAATAGCAACTTGTGCATTTGGCATTGAAGTTAATTCATTTGAAAAT
GCAAATAATGACTTCATGAGAATTGCAACAAAAGCTACAAACTTTAATTCTTCAGGAATG
CTTCTTAAATTGATTGGATTTTTTGGATTTCCATGGTTGATGAGTCGATTAAGAGTAAAA
TTTTTAGATAGTGAACTTTACGACTTTTTCGATAATGTCATTACTGAAACAATTAACACA
AGAGAACGAAAAGAAATTACTCGAAATGACATGATTGATTTACTTTTGCAAGCAAAACAT
GGAAAGCTTGAATATCAAGAAGAAAAATCATCATCTGATGGATTTGCTACTGTTGAAGAA
TCACAAATTGGAAAACAAAAAGTCAAAACTGTCTGGAGCAACCAAGACTTGATGGCTCAA
TGTTTTATCTTCTTCTTTGCTGGTTTCGAAACAGTTTCAAATGTGATGACCTTTATGGCA
TATGAACTCATTCTCAATCCTGATATTCAAAAGAAATTGCAAGATGAAATTGATGCAATG
AATGCTGAACTCAAAGGAGGTGATTTGACTTATGAAGATGTTCAGAAACTAAAATATATG
GATATGGTACTTTGTGAAACTTTGAGAATGTGGCCACCAGCTCCTATCATTGATAGAATG
TGTACAAAAGATTTTCTCTTGGAATATGACAACAAAAAAGTTCAAATTGAAGTTGGCAGA
AATTTCTATATTCCTGTCTATTCTTTGCATCATAACGAAAACTACTTTCCAAATCCGAAT
AGATTTGATCCAGAACGTTTCAGTGATGAAAACAAGAAAAACATCAGACAGGATTGTTAT
TTACCTTTTGGAATTGGTCCAAGGAATTGCATCGGAAATCGTTTCGCTTTACTTGAAGTC
AAGACAATCTTCTATTATCTTCTTTTGAATTTTAATTTTGAAGCAACAAAGGACACACAA
ATTCCAATTAAATTGGCAAACAATCAAGCTACTTTCCAATTCGAGAAGGGCTTGCATTGC
GCATTAGTTCCAAGAACAAAATAA

>g13580.t6 Gene=g13580 Length=526
MFIWFLLIVALVALYKYGTRNFDYFRAKGVPFNKPRFFVGSRLGMVLKTSNMIEFVEEIY
NEFRNEKVSGMFEFNHPAFFIRDPELIKKLAVKEFDSFMDHRLVLSEDAEPLFAKALFGL
TGQKWKDMRATLSPAFTGSKMRLMFKLMNEVGSKMSKTVCDKINKGADNKVEFKEFSRKF
TIDIIATCAFGIEVNSFENANNDFMRIATKATNFNSSGMLLKLIGFFGFPWLMSRLRVKF
LDSELYDFFDNVITETINTRERKEITRNDMIDLLLQAKHGKLEYQEEKSSSDGFATVEES
QIGKQKVKTVWSNQDLMAQCFIFFFAGFETVSNVMTFMAYELILNPDIQKKLQDEIDAMN
AELKGGDLTYEDVQKLKYMDMVLCETLRMWPPAPIIDRMCTKDFLLEYDNKKVQIEVGRN
FYIPVYSLHHNENYFPNPNRFDPERFSDENKKNIRQDCYLPFGIGPRNCIGNRFALLEVK
TIFYYLLLNFNFEATKDTQIPIKLANNQATFQFEKGLHCALVPRTK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g13580.t6 Gene3D G3DSA:1.10.630.10 Cytochrome p450 13 526 6.8E-132
2 g13580.t6 PANTHER PTHR24292 CYTOCHROME P450 12 509 8.7E-189
3 g13580.t6 PANTHER PTHR24292:SF90 CYTOCHROME P450 317A1-RELATED 12 509 8.7E-189
5 g13580.t6 PRINTS PR00463 E-class P450 group I signature 315 332 9.8E-22
11 g13580.t6 PRINTS PR00385 P450 superfamily signature 326 343 6.5E-11
8 g13580.t6 PRINTS PR00463 E-class P450 group I signature 335 361 9.8E-22
12 g13580.t6 PRINTS PR00385 P450 superfamily signature 381 392 6.5E-11
7 g13580.t6 PRINTS PR00463 E-class P450 group I signature 424 448 9.8E-22
4 g13580.t6 PRINTS PR00463 E-class P450 group I signature 459 469 9.8E-22
9 g13580.t6 PRINTS PR00385 P450 superfamily signature 460 469 6.5E-11
6 g13580.t6 PRINTS PR00463 E-class P450 group I signature 469 492 9.8E-22
10 g13580.t6 PRINTS PR00385 P450 superfamily signature 469 480 6.5E-11
1 g13580.t6 Pfam PF00067 Cytochrome P450 35 510 1.5E-81
17 g13580.t6 Phobius SIGNAL_PEPTIDE Signal peptide region 1 18 -
18 g13580.t6 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 2 -
19 g13580.t6 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 3 14 -
20 g13580.t6 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 15 18 -
16 g13580.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 19 526 -
21 g13580.t6 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 462 471 -
13 g13580.t6 SUPERFAMILY SSF48264 Cytochrome P450 31 524 3.93E-110
14 g13580.t6 SignalP_EUK SignalP-noTM SignalP-noTM 1 21 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values