Gene loci information

Transcript annotation

  • This transcript has been annotated as 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13583 g13583.t13 TTS g13583.t13 31050505 31050505
chr_1 g13583 g13583.t13 isoform g13583.t13 31051315 31052489
chr_1 g13583 g13583.t13 exon g13583.t13.exon1 31051315 31051525
chr_1 g13583 g13583.t13 cds g13583.t13.CDS1 31051316 31051525
chr_1 g13583 g13583.t13 exon g13583.t13.exon2 31051578 31051796
chr_1 g13583 g13583.t13 cds g13583.t13.CDS2 31051578 31051796
chr_1 g13583 g13583.t13 exon g13583.t13.exon3 31051852 31052244
chr_1 g13583 g13583.t13 cds g13583.t13.CDS3 31051852 31052244
chr_1 g13583 g13583.t13 exon g13583.t13.exon4 31052324 31052489
chr_1 g13583 g13583.t13 cds g13583.t13.CDS4 31052324 31052404
chr_1 g13583 g13583.t13 TSS g13583.t13 NA NA

Sequences

>g13583.t13 Gene=g13583 Length=989
AGTCTTTAATTTAGGCGAGTATCGTCGTAACGTAACACAAGCATATAGAAATCATGATTT
CTTTCGACCTGATAATGACATAGCTATGCAGATTAGAACAAGTTGTGCAAAGCACGCGCT
AGATGACGTTGTGCAATGGCTTGAAACGGGAGGAGGAGAAGTTGCAGTTTTTGATGCAAC
AAACTCGACATACGAACGACGCAAAATGATTGAAGAAGTTGTTGTTAAACAAAAAAAATT
TAAGCTTCTTTTCGTTGAGTCAATTTGCGATGATCCGAATATCATTGAACAGAACATTAT
GGAAGTAAAAGTTAGTAGTCCTGATTATGCAAATATGAACAAAGACGATGCAATGAACGA
TTTTCGGCAAAGGATTGAGCATTATCAAGAAAAATATCAGCCTCTAGATCGAGAACAGGA
GAAAGACTATTCTTATATGAAAATTTACAACACCGGTGAAAAGATAATAATTCACAAACA
CGAAGGTCACATTCAATCACGAATTGTGTACTTTTTAATGAATATACACATCACAAAGAG
AACAATTTATTTGACTCGACATGGTGAAAGTGAACACAACTTGAAGGGTTTGATTGGAGG
TGATTCTGACTTGAGTGTTCGTGGAAAATTATACGCAGAAGCTCTTGCCAATTATATCAA
CGATCAAAACATTGAAGGATTGCGTGTATGGACATCATGGCTTAAAAGAACGATTCAGAC
AGTTGCAGAAATAAAAGCACCTCAAGAGAGATGGAAGGCTCTTAATGAGATTGATGCTGG
TATTTGCGAGGAAATGACTTATGAAGAGATTCAAAAGAAATTCCCCGAAGATTTCCGTGC
TCGTGACCAAAATAAATTCTTTTATCGTTACCCACGCGGTGAAAGCTATGAAGATTTAGT
TGTGAGATTAGAACCAGTAATGATGGAATTAGAGCGACAAGGTAATGTACTTGTTGTTAC
TCATCAAGCCGTACTTCGATGCATTTTGG

>g13583.t13 Gene=g13583 Length=301
MQIRTSCAKHALDDVVQWLETGGGEVAVFDATNSTYERRKMIEEVVVKQKKFKLLFVESI
CDDPNIIEQNIMEVKVSSPDYANMNKDDAMNDFRQRIEHYQEKYQPLDREQEKDYSYMKI
YNTGEKIIIHKHEGHIQSRIVYFLMNIHITKRTIYLTRHGESEHNLKGLIGGDSDLSVRG
KLYAEALANYINDQNIEGLRVWTSWLKRTIQTVAEIKAPQERWKALNEIDAGICEEMTYE
EIQKKFPEDFRARDQNKFFYRYPRGESYEDLVVRLEPVMMELERQGNVLVVTHQAVLRCI
L

Protein features from InterProScan

Transcript Database ID Name Start End E.value
17 g13583.t13 CDD cd07067 HP_PGM_like 153 301 4.99028E-26
15 g13583.t13 Coils Coil Coil 90 110 -
13 g13583.t13 Gene3D G3DSA:3.40.50.300 - 1 149 1.6E-57
14 g13583.t13 Gene3D G3DSA:3.40.50.1240 - 150 301 1.0E-60
3 g13583.t13 PANTHER PTHR10606:SF44 6-PHOSPHOFRUCTO 2-KINASE/FRUCTOSE 2,6-BISPHOSPHATASE LONG FORM 1 301 1.9E-140
4 g13583.t13 PANTHER PTHR10606 6-PHOSPHOFRUCTO-2-KINASE/FRUCTOSE-2,6-BISPHOSPHATASE 1 301 1.9E-140
16 g13583.t13 PIRSF PIRSF000709 6PFK_fruc_bisph_Ptase 1 301 6.1E-150
7 g13583.t13 PRINTS PR00991 6-phosphofructo-2-kinase family signature 26 40 7.1E-48
9 g13583.t13 PRINTS PR00991 6-phosphofructo-2-kinase family signature 53 67 7.1E-48
5 g13583.t13 PRINTS PR00991 6-phosphofructo-2-kinase family signature 79 93 7.1E-48
6 g13583.t13 PRINTS PR00991 6-phosphofructo-2-kinase family signature 132 153 7.1E-48
10 g13583.t13 PRINTS PR00991 6-phosphofructo-2-kinase family signature 154 176 7.1E-48
8 g13583.t13 PRINTS PR00991 6-phosphofructo-2-kinase family signature 231 247 7.1E-48
1 g13583.t13 Pfam PF01591 6-phosphofructo-2-kinase 1 150 2.6E-55
2 g13583.t13 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 154 301 4.3E-35
19 g13583.t13 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 156 165 -
18 g13583.t13 SMART SM00855 PGAM_5 153 300 1.9E-19
12 g13583.t13 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 7 151 7.36E-21
11 g13583.t13 SUPERFAMILY SSF53254 Phosphoglycerate mutase-like 153 301 1.61E-50

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006003 fructose 2,6-bisphosphate metabolic process BP
GO:0005524 ATP binding MF
GO:0006000 fructose metabolic process BP
GO:0003824 catalytic activity MF
GO:0003873 6-phosphofructo-2-kinase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values