General information for g13583.t8
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2.
Parent gene
- The parent gene g13583 is located on chr_1: 31052241..31053399 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13583 | g13583.t8 | TTS | g13583.t8 | 31050505 | 31050505 |
| chr_1 | g13583 | g13583.t8 | isoform | g13583.t8 | 31050622 | 31051857 |
| chr_1 | g13583 | g13583.t8 | exon | g13583.t8.exon1 | 31050622 | 31050675 |
| chr_1 | g13583 | g13583.t8 | cds | g13583.t8.CDS1 | 31050622 | 31050675 |
| chr_1 | g13583 | g13583.t8 | exon | g13583.t8.exon2 | 31051107 | 31051234 |
| chr_1 | g13583 | g13583.t8 | cds | g13583.t8.CDS2 | 31051107 | 31051234 |
| chr_1 | g13583 | g13583.t8 | exon | g13583.t8.exon3 | 31051291 | 31051525 |
| chr_1 | g13583 | g13583.t8 | cds | g13583.t8.CDS3 | 31051291 | 31051510 |
| chr_1 | g13583 | g13583.t8 | exon | g13583.t8.exon4 | 31051578 | 31051796 |
| chr_1 | g13583 | g13583.t8 | exon | g13583.t8.exon5 | 31051852 | 31051857 |
| chr_1 | g13583 | g13583.t8 | TSS | g13583.t8 | NA | NA |
Sequences
>g13583.t8 Gene=g13583 Length=642
ACTCGACATGGTGAAAGTGAACACAACTTGAAGGGTTTGATTGGAGGTGATTCTGACTTG
AGTGTTCGTGGAAAATTATACGCAGAAGCTCTTGCCAATTATATCAACGATCAAAACATT
GAAGGATTGCGTGTATGGACATCATGGCTTAAAAGAACGATTCAGACAGTTGCAGAAATA
AAAGCACCTCAAGAGAGATGGAAGGCTCTTAATGAGATTGATGCTGGTATTTGCGAGGAA
ATGACTTATGAAGAGATTCAAAAGAAATTCCCCGAAGATTTCCGTGCTCGTGACCAAAAT
AAATTCTTTTATCGTTACCCACGCGGTGAAAGCTATGAAGATTTAGTTGTGAGATTAGAA
CCAGTAATGATGGAATTAGAGCGACAAGGTAATGTACTTGTTGTTACTCATCAAGCCGTA
CTTCGATGCATTTTGGCTTACTTTTTGGATAAGCCAGCGAGCGAACTGCCATATCTTGAA
GTTCCATTACATACAATTATTAAATTGACACCTGTGGCATATGGATGTAAATGTGAATTT
ATTAAAATTCCTGTTGATGCAGTTAGTACTCATCGCCCAAAACCAGAGGTTCCTGGAACA
ATTGAAAAACTTATAAATAGATCGAATGGTGAGATTGAATGA
>g13583.t8 Gene=g13583 Length=133
MTYEEIQKKFPEDFRARDQNKFFYRYPRGESYEDLVVRLEPVMMELERQGNVLVVTHQAV
LRCILAYFLDKPASELPYLEVPLHTIIKLTPVAYGCKCEFIKIPVDAVSTHRPKPEVPGT
IEKLINRSNGEIE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g13583.t8 | CDD | cd07067 | HP_PGM_like | 38 | 95 | 0 |
| 5 | g13583.t8 | Gene3D | G3DSA:3.40.50.1240 | - | 1 | 126 | 0 |
| 2 | g13583.t8 | PANTHER | PTHR10606 | 6-PHOSPHOFRUCTO-2-KINASE/FRUCTOSE-2,6-BISPHOSPHATASE | 1 | 119 | 0 |
| 3 | g13583.t8 | PANTHER | PTHR10606:SF48 | 6-PHOSPHOFRUCTO-2-KINASE/FRUCTOSE-2,6-BISPHOSPHATASE 2 | 1 | 119 | 0 |
| 6 | g13583.t8 | PIRSF | PIRSF000709 | 6PFK_fruc_bisph_Ptase | 1 | 131 | 0 |
| 1 | g13583.t8 | Pfam | PF00300 | Histidine phosphatase superfamily (branch 1) | 1 | 99 | 0 |
| 4 | g13583.t8 | SUPERFAMILY | SSF53254 | Phosphoglycerate mutase-like | 1 | 107 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006003 | fructose 2,6-bisphosphate metabolic process | BP |
| GO:0005524 | ATP binding | MF |
| GO:0003824 | catalytic activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
