General information for g13619.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g13619 is located on chr_1: 31319372..31321026 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13619 | g13619.t3 | TSS | g13619.t3 | 31319279 | 31319279 |
| chr_1 | g13619 | g13619.t3 | isoform | g13619.t3 | 31319372 | 31320525 |
| chr_1 | g13619 | g13619.t3 | exon | g13619.t3.exon1 | 31319372 | 31319435 |
| chr_1 | g13619 | g13619.t3 | exon | g13619.t3.exon2 | 31319498 | 31320525 |
| chr_1 | g13619 | g13619.t3 | cds | g13619.t3.CDS1 | 31319772 | 31320524 |
| chr_1 | g13619 | g13619.t3 | TTS | g13619.t3 | 31321078 | 31321078 |
Sequences
>g13619.t3 Gene=g13619 Length=1092
ATGGGACGAAGATCGATTAACACCACTAAAAGTGGAAAATATATGAATCCAACAGATCAA
GCAAGAAAAGAGGCTCGCAAGAAAGAACTGAAGAAGAATAAGAAACAAAGGCAAATGGTA
AGGCAAGCAGTGCTTAAAAATAAAGATCCAAGTCAATTATTAGAAGAAATGGAGAAAATA
GATGAGATGGGTAAGTTTATAAAAAAGTGCAAAATTTTTGATCCAGTAGTTCATCATTCT
TTTAAATTGCAGAATATAATGTTCTTCAACCATCACCACTTAATGAAAAAGTTCTCAAAG
AAAAACGTAAAAAGTTGAAAGAAACATTTGATAGAGTTATGAGATTGCTGCATGAAGAAG
AACTTGAACAGTGGCAGGAAATGAAACGAAAAGAAGTAGAATATGAAAAACGTAAATATA
AAAGAGTTCAATACTATGAGAGTGTTAGACATGCTGAGCAAGTATCAATAGAAGATATCC
CATTACCTTCTTCAACGAGTGATAAACCGATTCCCTCGACGATACCCAAAATAAGTTTGC
CTCCACCGATTTTACTCACTAATGTTCCACCGCCAACTTCACTTAAAAAACCAAATGAAG
AATCGATGCCTAATGAACTTAAAGAAAAAGAACCACCTGGCATACCAGCATCGATGCCTC
CCGATTTGTTTGAAATGCGAGAATTAGATTCTGACTATGAAAGTGAACATGATAAAGAAG
TTGATGAAGAAAATGCTTCCAAAGATGATTCACTCAAAGATAAACATGATAAAAATATTG
AAGAGTTTATGCGAGAAGTTGAATCTGTTCAAAAGAAGAAAGATGAAGATCGAACGCTTG
AAATGATCATAGATCCAACACCTGAAGTTGAAATTGAAGAAAATAAAGAAAAAGCAGAAG
AAAGTAATCAAAATGAGCAACCTCAAGAACAACAACAAAGTACAGTTCAAGAACCTGAAA
TTATGAAAACAGTTCCTGAAACTCTTCCGATTCCTGCTATTCCACCTATGGCATTACAAC
CTAGAATGCCTCCACATCCACTTATTTTCAGACCGCCACCAATGGGACCGCGTGGAATGG
GAATTAGAATGC
>g13619.t3 Gene=g13619 Length=251
MRLLHEEELEQWQEMKRKEVEYEKRKYKRVQYYESVRHAEQVSIEDIPLPSSTSDKPIPS
TIPKISLPPPILLTNVPPPTSLKKPNEESMPNELKEKEPPGIPASMPPDLFEMRELDSDY
ESEHDKEVDEENASKDDSLKDKHDKNIEEFMREVESVQKKKDEDRTLEMIIDPTPEVEIE
ENKEKAEESNQNEQPQEQQQSTVQEPEIMKTVPETLPIPAIPPMALQPRMPPHPLIFRPP
PMGPRGMGIRM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g13619.t3 | Coils | Coil | Coil | 140 | 160 | - |
| 1 | g13619.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 206 | - |
| 5 | g13619.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 60 | - |
| 3 | g13619.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 76 | - |
| 4 | g13619.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 112 | 191 | - |
| 2 | g13619.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 192 | 206 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
