General information for g13619.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative WW domain-binding protein 11.
Parent gene
- The parent gene g13619 is located on chr_1: 31319372..31321026 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13619 | g13619.t4 | TSS | g13619.t4 | 31319279 | 31319279 |
| chr_1 | g13619 | g13619.t4 | isoform | g13619.t4 | 31319372 | 31321026 |
| chr_1 | g13619 | g13619.t4 | exon | g13619.t4.exon1 | 31319372 | 31319435 |
| chr_1 | g13619 | g13619.t4 | cds | g13619.t4.CDS1 | 31319372 | 31319435 |
| chr_1 | g13619 | g13619.t4 | exon | g13619.t4.exon2 | 31319498 | 31319623 |
| chr_1 | g13619 | g13619.t4 | cds | g13619.t4.CDS2 | 31319498 | 31319623 |
| chr_1 | g13619 | g13619.t4 | exon | g13619.t4.exon3 | 31319686 | 31320531 |
| chr_1 | g13619 | g13619.t4 | cds | g13619.t4.CDS3 | 31319686 | 31320531 |
| chr_1 | g13619 | g13619.t4 | exon | g13619.t4.exon4 | 31320593 | 31320659 |
| chr_1 | g13619 | g13619.t4 | cds | g13619.t4.CDS4 | 31320593 | 31320659 |
| chr_1 | g13619 | g13619.t4 | exon | g13619.t4.exon5 | 31320713 | 31321026 |
| chr_1 | g13619 | g13619.t4 | cds | g13619.t4.CDS5 | 31320713 | 31320746 |
| chr_1 | g13619 | g13619.t4 | TTS | g13619.t4 | 31321078 | 31321078 |
Sequences
>g13619.t4 Gene=g13619 Length=1417
ATGGGACGAAGATCGATTAACACCACTAAAAGTGGAAAATATATGAATCCAACAGATCAA
GCAAGAAAAGAGGCTCGCAAGAAAGAACTGAAGAAGAATAAGAAACAAAGGCAAATGGTA
AGGCAAGCAGTGCTTAAAAATAAAGATCCAAGTCAATTATTAGAAGAAATGGAGAAAATA
GATGAGATGGAATATAATGTTCTTCAACCATCACCACTTAATGAAAAAGTTCTCAAAGAA
AAACGTAAAAAGTTGAAAGAAACATTTGATAGAGTTATGAGATTGCTGCATGAAGAAGAA
CTTGAACAGTGGCAGGAAATGAAACGAAAAGAAGTAGAATATGAAAAACGTAAATATAAA
AGAGTTCAATACTATGAGAGTGTTAGACATGCTGAGCAAGTATCAATAGAAGATATCCCA
TTACCTTCTTCAACGAGTGATAAACCGATTCCCTCGACGATACCCAAAATAAGTTTGCCT
CCACCGATTTTACTCACTAATGTTCCACCGCCAACTTCACTTAAAAAACCAAATGAAGAA
TCGATGCCTAATGAACTTAAAGAAAAAGAACCACCTGGCATACCAGCATCGATGCCTCCC
GATTTGTTTGAAATGCGAGAATTAGATTCTGACTATGAAAGTGAACATGATAAAGAAGTT
GATGAAGAAAATGCTTCCAAAGATGATTCACTCAAAGATAAACATGATAAAAATATTGAA
GAGTTTATGCGAGAAGTTGAATCTGTTCAAAAGAAGAAAGATGAAGATCGAACGCTTGAA
ATGATCATAGATCCAACACCTGAAGTTGAAATTGAAGAAAATAAAGAAAAAGCAGAAGAA
AGTAATCAAAATGAGCAACCTCAAGAACAACAACAAAGTACAGTTCAAGAACCTGAAATT
ATGAAAACAGTTCCTGAAACTCTTCCGATTCCTGCTATTCCACCTATGGCATTACAACCT
AGAATGCCTCCACATCCACTTATTTTCAGACCGCCACCAATGGGACCGCGTGGAATGGGA
ATTAGAATGCCTCCAGGTCCACCACCTGGTCCAAGACCGAATATGGGAATGCAAAGAATG
GGAATTCGAATGCCACCTGGTAAGTCCACCTCTTGGTCCACCACCTTTAAGACATAAAGG
GATGCATCATGATAGAGGAATGCCGCCTCAACAAAAGCAATCAACAACAACAATTACAGC
TAAACCACAAATTAGAAACTTATCAGCAGATGTTACACGTTTCGTTCCTACAACATTACG
AACAAAGCGTGATGAACCTAAAAAAGTCAAACCCAAGTCATATATACCCGAAACTCAAAT
GCAACAAGTCGCTATGCAACAACAACAACAGCAACAAAAACCAACAAAGGACGATGCTTA
TCTTCAATTTATGAACGAGCTTCAAGATTTATTGTAA
>g13619.t4 Gene=g13619 Length=378
MGRRSINTTKSGKYMNPTDQARKEARKKELKKNKKQRQMVRQAVLKNKDPSQLLEEMEKI
DEMEYNVLQPSPLNEKVLKEKRKKLKETFDRVMRLLHEEELEQWQEMKRKEVEYEKRKYK
RVQYYESVRHAEQVSIEDIPLPSSTSDKPIPSTIPKISLPPPILLTNVPPPTSLKKPNEE
SMPNELKEKEPPGIPASMPPDLFEMRELDSDYESEHDKEVDEENASKDDSLKDKHDKNIE
EFMREVESVQKKKDEDRTLEMIIDPTPEVEIEENKEKAEESNQNEQPQEQQQSTVQEPEI
MKTVPETLPIPAIPPMALQPRMPPHPLIFRPPPMGPRGMGIRMPPGPPPGPRPNMGMQRM
GIRMPPGKSTSWSTTFKT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g13619.t4 | Coils | Coil | Coil | 18 | 38 | - |
| 11 | g13619.t4 | Coils | Coil | Coil | 82 | 102 | - |
| 10 | g13619.t4 | Coils | Coil | Coil | 232 | 252 | - |
| 6 | g13619.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - |
| 8 | g13619.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 40 | - |
| 9 | g13619.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 139 | 298 | - |
| 4 | g13619.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 154 | 168 | - |
| 7 | g13619.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 283 | - |
| 5 | g13619.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 284 | 298 | - |
| 2 | g13619.t4 | PANTHER | PTHR13361 | WW DOMAIN-BINDING PROTEIN 11 | 1 | 176 | 4.7E-51 |
| 3 | g13619.t4 | PANTHER | PTHR13361:SF4 | WW DOMAIN-BINDING PROTEIN 11 | 1 | 176 | 4.7E-51 |
| 1 | g13619.t4 | Pfam | PF09429 | WW domain binding protein 11 | 12 | 93 | 1.5E-21 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006396 | RNA processing | BP |
KEGG
Orthology
- This transcript has been annotated with K12866 (WW domain-binding protein 11)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
