General information for g13626.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Zinc finger protein 596.
Parent gene
- The parent gene g13626 is located on chr_1: 31345102..31345662 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13626 | g13626.t1 | isoform | g13626.t1 | 31343808 | 31345662 |
| chr_1 | g13626 | g13626.t1 | exon | g13626.t1.exon1 | 31343808 | 31345042 |
| chr_1 | g13626 | g13626.t1 | cds | g13626.t1.CDS1 | 31343808 | 31345042 |
| chr_1 | g13626 | g13626.t1 | exon | g13626.t1.exon2 | 31345102 | 31345196 |
| chr_1 | g13626 | g13626.t1 | cds | g13626.t1.CDS2 | 31345102 | 31345196 |
| chr_1 | g13626 | g13626.t1 | exon | g13626.t1.exon3 | 31345256 | 31345662 |
| chr_1 | g13626 | g13626.t1 | cds | g13626.t1.CDS3 | 31345256 | 31345662 |
| chr_1 | g13626 | g13626.t1 | TSS | g13626.t1 | NA | NA |
| chr_1 | g13626 | g13626.t1 | TTS | g13626.t1 | NA | NA |
Sequences
>g13626.t1 Gene=g13626 Length=1737
ATGGGTGATGAGTCAAATTTCCTTGAAAATCATATAGCTAAATGTCGTTGTTGTTTTCAA
TCATTGAGTGACAATAAAAATGTTGTGAAAATCACAAAATCAGTAGAAAAAGTGTTTTTT
GAGTTGACACAGTTAGAATTAAAATCATTACAAAAAATTTATTCTCAAAAAATATGTCAA
GAATGCGATAGAAATTTAAAACATTTTCACAAGTATAGAAAAGAACTGATAAGAAAGCAA
AAGAAGCTCTATGAATTTACAGAAGGAGATAAAATTAAAAATAGACCATCTAGAAAACGC
AATGAGAAAAAAATATCAACTGAAAATGACAATGAAACATCATCATTTGAGGAAGAGCAC
AGAGATATATTTGTTAAACTTGAGGTCAAAGAAGAAAGAGATGAGGACAACAATGATTCA
TGTATTGTCTTAGAACCTCTTACTTCAATAGATCCAATGATGCCGTATGTGAAATTAGAA
AAGATGAATATGGAAGAAATCACAAGCATGCCTGATCATTTCTATGATTCAGATTCAAAC
AATGCTCAAAATTTTCCTACAAAGGAAGAAGAAAATGAAGAAGAGGAAGATGATGGAGTC
AAAGATCCGTTTGAAGAATTTTTTAAAAATCAAGAAAAAGCAAAAAAGAAGAACAAATAC
AAGAGGAAAAAAGATAGACAACCTTTCAATAAAGTATTTTGTCCTTATTGTGACAAATTT
TTCTTAAAAGAAGAAAAACTCAAAATTCACATTGATTTTGTTCATTTTAAGCTAAAAAAT
TACAAATGTACAAAATGTGATTTTAAAACTTATTCTCCAGCTTTTCTAAAAGGTCACGAT
GAAAGAGTGCATAGTGATAAAGTTATTGAACCCAAGCCAAAACCACCAAAACAACCTTGT
CCAATTTGTGGACTACTCGTTCAAAAGACTTCTACGCATATTAGAAACATTCACACTCGA
CCAAAGAATGTTTTTTGTGACATTTGTGGATATGGAATTTTCAATGTTAACAAATTAAGA
AGACACATGTATAAACATCTTTCAAAAGAGACTAAACGATCTTTAGTTGTTTACTCTTGT
GATTTATGTGGTGCGAAATTACATAGTAAAAATTCTATTTCGTCTCATATGAAAAATCTG
CACCGTGAAAAAGGAAAAATGTATTCATGCTATTGTGGAAAAACGTATAGAGCAGAATCA
TATTTGAAGGTTCATCAACGATCACATGAGAAAGTATTAAAACACAAATGCAATCATTGT
GACAAAGCTTTTATGAATTTATCACAATTAAAAATTCATCTTGAAATTCATGAACGAGGC
AAAAGAAAAGATTTTTCATGTGAGGTGTGCGGAAAAATGTATGGAACAGAAAATCTCTTG
CACAGGCACAAAATATTTCATACCGAACCTACAATTCCTTGCAATTATTGTGGAAAAATG
TTTCATCGTCAATGTTTACTTGCACGTCATATTCGTGCGCAACATGAAGTTGAATTAGGT
GAATGCGAATATTGTGGAAAACAAATGAATGTTATTTCATTACAAAGACATATTAAAGAA
TTTCATAGCAATCTTCCAAGAAAATTATGTCCTGTCACTGGCTGTACTTCATCATTTTTG
AGAAAATGTCACTTGAAAGATCATATTCAACGAGTGCATAAAGATTTTCTACATAGAATG
ACACCTGATGAAAAAGATGCATTTGAAGATGTCATAAATGCAATGAATTTAATATGA
>g13626.t1 Gene=g13626 Length=578
MGDESNFLENHIAKCRCCFQSLSDNKNVVKITKSVEKVFFELTQLELKSLQKIYSQKICQ
ECDRNLKHFHKYRKELIRKQKKLYEFTEGDKIKNRPSRKRNEKKISTENDNETSSFEEEH
RDIFVKLEVKEERDEDNNDSCIVLEPLTSIDPMMPYVKLEKMNMEEITSMPDHFYDSDSN
NAQNFPTKEEENEEEEDDGVKDPFEEFFKNQEKAKKKNKYKRKKDRQPFNKVFCPYCDKF
FLKEEKLKIHIDFVHFKLKNYKCTKCDFKTYSPAFLKGHDERVHSDKVIEPKPKPPKQPC
PICGLLVQKTSTHIRNIHTRPKNVFCDICGYGIFNVNKLRRHMYKHLSKETKRSLVVYSC
DLCGAKLHSKNSISSHMKNLHREKGKMYSCYCGKTYRAESYLKVHQRSHEKVLKHKCNHC
DKAFMNLSQLKIHLEIHERGKRKDFSCEVCGKMYGTENLLHRHKIFHTEPTIPCNYCGKM
FHRQCLLARHIRAQHEVELGECEYCGKQMNVISLQRHIKEFHSNLPRKLCPVTGCTSSFL
RKCHLKDHIQRVHKDFLHRMTPDEKDAFEDVINAMNLI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 20 | g13626.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 227 | 296 | 9.3E-9 |
| 18 | g13626.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 319 | 384 | 1.0E-8 |
| 19 | g13626.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 385 | 440 | 1.6E-11 |
| 21 | g13626.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 441 | 500 | 6.1E-11 |
| 40 | g13626.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 95 | 116 | - |
| 41 | g13626.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 176 | 203 | - |
| 7 | g13626.t1 | PANTHER | PTHR24404:SF73 | ZINC FINGER PROTEIN 300-LIKE PROTEIN | 293 | 434 | 6.9E-50 |
| 11 | g13626.t1 | PANTHER | PTHR24404 | ZINC FINGER PROTEIN | 293 | 434 | 6.9E-50 |
| 6 | g13626.t1 | PANTHER | PTHR24404:SF73 | ZINC FINGER PROTEIN 300-LIKE PROTEIN | 355 | 469 | 6.9E-50 |
| 10 | g13626.t1 | PANTHER | PTHR24404 | ZINC FINGER PROTEIN | 355 | 469 | 6.9E-50 |
| 5 | g13626.t1 | PANTHER | PTHR24404:SF73 | ZINC FINGER PROTEIN 300-LIKE PROTEIN | 382 | 492 | 6.9E-50 |
| 9 | g13626.t1 | PANTHER | PTHR24404 | ZINC FINGER PROTEIN | 382 | 492 | 6.9E-50 |
| 4 | g13626.t1 | PANTHER | PTHR24404:SF73 | ZINC FINGER PROTEIN 300-LIKE PROTEIN | 414 | 522 | 6.9E-50 |
| 8 | g13626.t1 | PANTHER | PTHR24404 | ZINC FINGER PROTEIN | 414 | 522 | 6.9E-50 |
| 2 | g13626.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 391 | 409 | 0.0077 |
| 3 | g13626.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 415 | 437 | 0.0017 |
| 1 | g13626.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 473 | 495 | 3.6E-4 |
| 23 | g13626.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 234 | 255 | - |
| 25 | g13626.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 326 | 346 | - |
| 28 | g13626.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 360 | 381 | - |
| 22 | g13626.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 417 | 437 | - |
| 26 | g13626.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 447 | 467 | - |
| 24 | g13626.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 474 | 495 | - |
| 27 | g13626.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 530 | 553 | - |
| 43 | g13626.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 232 | 260 | 8.912 |
| 45 | g13626.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 358 | 386 | 9.681 |
| 46 | g13626.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 388 | 409 | 8.725 |
| 47 | g13626.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 415 | 442 | 11.365 |
| 44 | g13626.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 445 | 472 | 10.429 |
| 42 | g13626.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 472 | 500 | 10.325 |
| 29 | g13626.t1 | SMART | SM00868 | zf_AD_2 | 14 | 86 | 0.0043 |
| 37 | g13626.t1 | SMART | SM00355 | c2h2final6 | 232 | 255 | 0.41 |
| 32 | g13626.t1 | SMART | SM00355 | c2h2final6 | 261 | 284 | 1.8 |
| 35 | g13626.t1 | SMART | SM00355 | c2h2final6 | 324 | 346 | 0.11 |
| 36 | g13626.t1 | SMART | SM00355 | c2h2final6 | 358 | 381 | 0.026 |
| 38 | g13626.t1 | SMART | SM00355 | c2h2final6 | 388 | 409 | 18.0 |
| 39 | g13626.t1 | SMART | SM00355 | c2h2final6 | 415 | 437 | 0.0055 |
| 31 | g13626.t1 | SMART | SM00355 | c2h2final6 | 445 | 467 | 0.25 |
| 30 | g13626.t1 | SMART | SM00355 | c2h2final6 | 472 | 495 | 0.017 |
| 34 | g13626.t1 | SMART | SM00355 | c2h2final6 | 500 | 522 | 11.0 |
| 33 | g13626.t1 | SMART | SM00355 | c2h2final6 | 528 | 553 | 1.9 |
| 16 | g13626.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 233 | 279 | 1.17E-5 |
| 13 | g13626.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 299 | 347 | 5.2E-6 |
| 17 | g13626.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 357 | 409 | 1.3E-6 |
| 14 | g13626.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 396 | 454 | 1.66E-11 |
| 15 | g13626.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 442 | 483 | 3.36E-8 |
| 12 | g13626.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 473 | 513 | 6.49E-7 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005634 | nucleus | CC |
| GO:0008270 | zinc ion binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
