General information for g13626.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g13626 is located on chr_1: 31345102..31345662 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13626 | g13626.t2 | isoform | g13626.t2 | 31343808 | 31344451 |
| chr_1 | g13626 | g13626.t2 | exon | g13626.t2.exon1 | 31343808 | 31344451 |
| chr_1 | g13626 | g13626.t2 | cds | g13626.t2.CDS1 | 31343808 | 31344449 |
| chr_1 | g13626 | g13626.t2 | TSS | g13626.t2 | NA | NA |
| chr_1 | g13626 | g13626.t2 | TTS | g13626.t2 | NA | NA |
Sequences
>g13626.t2 Gene=g13626 Length=644
ATGGGTGATGAGTCAAATTTCCTTGAAAATCATATAGCTAAATGTCGTTGTTGTTTTCAA
TCATTGAGTGACAATAAAAATGTTGTGAAAATCACAAAATCAGTAGAAAAAGTGTTTTTT
GAGTTGACACAGTTAGAATTAAAATCATTACAAAAAATTTATTCTCAAAAAATATGTCAA
GAATGCGATAGAAATTTAAAACATTTTCACAAGTATAGAAAAGAACTGATAAGAAAGCAA
AAGAAGCTCTATGAATTTACAGAAGGAGATAAAATTAAAAATAGACCATCTAGAAAACGC
AATGAGAAAAAAATATCAACTGAAAATGACAATGAAACATCATCATTTGAGGAAGAGCAC
AGAGATATATTTGTTAAACTTGAGGTCAAAGAAGAAAGAGATGAGGACAACAATGATTCA
TGTATTGTCTTAGAACCTCTTACTTCAATAGATCCAATGATGCCGTATGTGAAATTAGAA
AAGATGAATATGGAAGAAATCACAAGCATGCCTGATCATTTCTATGATTCAGATTCAAAC
AATGCTCAAAATTTTCCTACAAAGGAAGAAGAAAATGAAGAAGAGGAAGATGATGGAGTC
AAAGATCCGTTTGAAGAATTTTTTAAAAATCAAGAAAAAGCAAA
>g13626.t2 Gene=g13626 Length=214
MGDESNFLENHIAKCRCCFQSLSDNKNVVKITKSVEKVFFELTQLELKSLQKIYSQKICQ
ECDRNLKHFHKYRKELIRKQKKLYEFTEGDKIKNRPSRKRNEKKISTENDNETSSFEEEH
RDIFVKLEVKEERDEDNNDSCIVLEPLTSIDPMMPYVKLEKMNMEEITSMPDHFYDSDSN
NAQNFPTKEEENEEEEDDGVKDPFEEFFKNQEKA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g13626.t2 | Gene3D | G3DSA:3.40.1800.20 | - | 13 | 86 | 3.2E-5 |
| 4 | g13626.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 95 | 116 | - |
| 5 | g13626.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 173 | 214 | - |
| 1 | g13626.t2 | Pfam | PF07776 | Zinc-finger associated domain (zf-AD) | 15 | 84 | 3.7E-7 |
| 3 | g13626.t2 | SMART | SM00868 | zf_AD_2 | 14 | 86 | 0.0043 |
| 2 | g13626.t2 | SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 15 | 85 | 7.56E-5 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005634 | nucleus | CC |
| GO:0008270 | zinc ion binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
