General information for g13627.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Peptide transporter family 1.
Parent gene
- The parent gene g13627 is located on chr_1: 31345758..31348495 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13627 | g13627.t1 | isoform | g13627.t1 | 31345758 | 31348495 |
| chr_1 | g13627 | g13627.t1 | exon | g13627.t1.exon1 | 31345758 | 31347143 |
| chr_1 | g13627 | g13627.t1 | cds | g13627.t1.CDS1 | 31345758 | 31347143 |
| chr_1 | g13627 | g13627.t1 | exon | g13627.t1.exon2 | 31347202 | 31347646 |
| chr_1 | g13627 | g13627.t1 | cds | g13627.t1.CDS2 | 31347202 | 31347646 |
| chr_1 | g13627 | g13627.t1 | exon | g13627.t1.exon3 | 31347716 | 31347857 |
| chr_1 | g13627 | g13627.t1 | cds | g13627.t1.CDS3 | 31347716 | 31347857 |
| chr_1 | g13627 | g13627.t1 | exon | g13627.t1.exon4 | 31347915 | 31347993 |
| chr_1 | g13627 | g13627.t1 | cds | g13627.t1.CDS4 | 31347915 | 31347993 |
| chr_1 | g13627 | g13627.t1 | exon | g13627.t1.exon5 | 31348472 | 31348495 |
| chr_1 | g13627 | g13627.t1 | cds | g13627.t1.CDS5 | 31348472 | 31348495 |
| chr_1 | g13627 | g13627.t1 | TSS | g13627.t1 | NA | NA |
| chr_1 | g13627 | g13627.t1 | TTS | g13627.t1 | NA | NA |
Sequences
>g13627.t1 Gene=g13627 Length=2076
ATGGCATGTGAAGGCTATTATAACACCCCAAAATATCCAAAGTCTATCGCATTCATCGTC
AGCAATGAATTTTGCGAAAGATTCAATTTTTATGGAATGCGAACCATCCTGGTATTATAC
ATGACAATCAAACTTGGGTATAGTGATAATACAGCGACCGTTTTGTTTCACATTTTTACA
AGTCTCGTATACTTTTTCCCTGTTATGGGAGCAGTGATTGCCGACAGCTTTCTAGGCAAA
TTTCGAACAATTTTGTATCTTTCATGTGTTTATGCAATTGGTAGTTGGTTAATCACACTT
GGTGCTATTCCAACACTCAATCTACCCGCGCAAACTATGACAGTTATTGGACTTTTATTG
ATTGGCTTGGGCAGTGGTGGCATTAAACCGTGTGTTGCTGCATTTGGCGGTGATCAATTC
AAAATTCCCGAACAAGCCAAACAACTCGCGACATTTTTCTCTTTGTTTTATTTTTCTATC
AATGCCGGATCGCTTATATCAACTTATTTAATGCCTATATTGAGAAATGATGTGCATTGT
TTTGGTGAACTTAGTTGTTTCTCATTAGCCTTTGGTGTCCCTGGTGTACTTATGGTTATC
TCAATAATAATTTTTGTATGCGGAAAATCACTTTATATTGTGAAGAAGCCAACTGGTAAT
GTTATTGTCGATGTCACAAAATGTATTTTCCATGCCATATCAGAAAAATCCAAACAGAAA
CATAGAGATGAAGCTCATTGGTTAGATTATGCTGAGCCAAAATATACTAAACAAATGATC
AATGATATCAAATCAGTTCTTAAAATTCTTTTACTCTTTCTTCCACTTCCTATCTTTTGG
GCACTTTTCGATCAACAAGGTTCACGATGGACATTCCAAGCAACTCGCATGAATGGTGAT
ATAGGTTTTATTGAAATCAAACCTGATCAAATGCAGTTAATTAATCCGTTGCTAATTCTT
GTGTTCATTCCACTTTTTGATGTAATTGTTTATCCATTACTGGCAAGTTTTGGTATAAAA
AGACCATTACAAAAACTTACGGTTGGTGGACTATTGGCAGCTATAGCATTTATAATTTCT
GGTTTTGTTGAAATTCAATTAGAAAAAACTTATCCTTCATATCCGTCTATTCATGAATCA
CAAATGAGAGTTTTTAATGGAATTCCTTGTATATTTGAGATGCAAAATTTTTCAGGTACA
TCATCAGAAAATAGACTAGAGCCATTTAATGTTTTTAAATATACACAAGTTGTTGATGAA
AGGTCTCAAAAACTCACAGTATTAGCTACTAACACGCCAGGCTGTTCATCATATAGTGAA
AAATTAAACATTCAAGCAGGAAAATCTAACAGTTTTTTCATTACTGGTATTGCAAATAAT
TTGACTATAAAAAGCTTCAACGACAAAATTGACAAATCTAAAAGTGGCAATCCATATGTT
CGTGTATTAGCAAATTTAAATTCAATTAAAGTGATCAAATTTATTGATAAAAATGGAGAA
AATGTAAAAACTATCGGAAGTGATTACATTGATCAATTTGAAATTTTACCAGGAATTTTT
ACTGTTTATGCCGATGATGTAAAAATTTCAAACATTGAAGTACAATTAGGTGGTGTTTAT
ACCATTGTAATCAGCCAAACAAAAGATAACATAAATTTAAAACTTCATGAAATCACATCG
CCAAATACTGTGCACATGCTTTGGTTGATTCCACAATATGTGATAATGACAGGTGCTGAA
GTAATGTTCTCTGTTACTGGTCTTAAATTTGCTTACTCACAAGCACCTGCCAGCATGAAA
TCACTTCTTCAAGCATCATGGCTATTAACTGTAGCGTTCGGAAATGTTTTTGTGGTTATC
ATTGCCGAAGCTAAATTCTTTCAATCACAAGCTCACGAATTTTTCCTCTTCTCTGTGATG
ATGTTTATCGATATGGTAATTTTTGTTCTTTTGGCTATGAAATATAAATATGTAAATACG
AACAATTCGAAGAGAGATGATGATGCTGAGAATGGTATACAAATTGAAGAAAATAAGAAA
AAGACTTTTACTAACAATGCATTTCAAGATGATTAA
>g13627.t1 Gene=g13627 Length=691
MACEGYYNTPKYPKSIAFIVSNEFCERFNFYGMRTILVLYMTIKLGYSDNTATVLFHIFT
SLVYFFPVMGAVIADSFLGKFRTILYLSCVYAIGSWLITLGAIPTLNLPAQTMTVIGLLL
IGLGSGGIKPCVAAFGGDQFKIPEQAKQLATFFSLFYFSINAGSLISTYLMPILRNDVHC
FGELSCFSLAFGVPGVLMVISIIIFVCGKSLYIVKKPTGNVIVDVTKCIFHAISEKSKQK
HRDEAHWLDYAEPKYTKQMINDIKSVLKILLLFLPLPIFWALFDQQGSRWTFQATRMNGD
IGFIEIKPDQMQLINPLLILVFIPLFDVIVYPLLASFGIKRPLQKLTVGGLLAAIAFIIS
GFVEIQLEKTYPSYPSIHESQMRVFNGIPCIFEMQNFSGTSSENRLEPFNVFKYTQVVDE
RSQKLTVLATNTPGCSSYSEKLNIQAGKSNSFFITGIANNLTIKSFNDKIDKSKSGNPYV
RVLANLNSIKVIKFIDKNGENVKTIGSDYIDQFEILPGIFTVYADDVKISNIEVQLGGVY
TIVISQTKDNINLKLHEITSPNTVHMLWLIPQYVIMTGAEVMFSVTGLKFAYSQAPASMK
SLLQASWLLTVAFGNVFVVIIAEAKFFQSQAHEFFLFSVMMFIDMVIFVLLAMKYKYVNT
NNSKRDDDAENGIQIEENKKKTFTNNAFQDD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 31 | g13627.t1 | CDD | cd17347 | MFS_SLC15A1_2_like | 13 | 659 | 5.84073E-174 |
| 7 | g13627.t1 | Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 7 | 495 | 7.1E-120 |
| 6 | g13627.t1 | Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 531 | 672 | 5.5E-30 |
| 3 | g13627.t1 | PANTHER | PTHR11654 | OLIGOPEPTIDE TRANSPORTER-RELATED | 14 | 667 | 3.3E-233 |
| 4 | g13627.t1 | PANTHER | PTHR11654:SF465 | - | 14 | 667 | 3.3E-233 |
| 2 | g13627.t1 | Pfam | PF00854 | POT family | 81 | 391 | 3.1E-96 |
| 1 | g13627.t1 | Pfam | PF00854 | POT family | 541 | 622 | 2.2E-12 |
| 18 | g13627.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 53 | - |
| 24 | g13627.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 54 | 72 | - |
| 12 | g13627.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 73 | 83 | - |
| 22 | g13627.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 84 | 103 | - |
| 16 | g13627.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 104 | 114 | - |
| 26 | g13627.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 115 | 137 | - |
| 11 | g13627.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 138 | 148 | - |
| 27 | g13627.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 149 | 169 | - |
| 19 | g13627.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 170 | 188 | - |
| 29 | g13627.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 189 | 208 | - |
| 9 | g13627.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 209 | 264 | - |
| 21 | g13627.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 265 | 283 | - |
| 15 | g13627.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 284 | 312 | - |
| 20 | g13627.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 313 | 334 | - |
| 13 | g13627.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 335 | 345 | - |
| 30 | g13627.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 346 | 363 | - |
| 17 | g13627.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 364 | 565 | - |
| 25 | g13627.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 566 | 590 | - |
| 8 | g13627.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 591 | 601 | - |
| 23 | g13627.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 602 | 622 | - |
| 14 | g13627.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 623 | 633 | - |
| 28 | g13627.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 634 | 655 | - |
| 10 | g13627.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 656 | 691 | - |
| 43 | g13627.t1 | ProSitePatterns | PS01022 | PTR2 family proton/oligopeptide symporters signature 1. | 70 | 94 | - |
| 44 | g13627.t1 | ProSitePatterns | PS01023 | PTR2 family proton/oligopeptide symporters signature 2. | 153 | 165 | - |
| 5 | g13627.t1 | SUPERFAMILY | SSF103473 | MFS general substrate transporter | 11 | 363 | 1.02E-18 |
| 33 | g13627.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 52 | 74 | - |
| 41 | g13627.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 83 | 105 | - |
| 38 | g13627.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 115 | 137 | - |
| 35 | g13627.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 149 | 171 | - |
| 39 | g13627.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 186 | 208 | - |
| 40 | g13627.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 266 | 283 | - |
| 42 | g13627.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 317 | 339 | - |
| 32 | g13627.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 346 | 365 | - |
| 34 | g13627.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 568 | 590 | - |
| 37 | g13627.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 602 | 624 | - |
| 36 | g13627.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 634 | 653 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0055085 | transmembrane transport | BP |
| GO:0006857 | oligopeptide transport | BP |
| GO:0022857 | transmembrane transporter activity | MF |
KEGG
Orthology
- This transcript has been annotated with K14206 (solute carrier family 15 (oligopeptide transporter), member 1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
