General information for g13631.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Peptide transporter family 1.
Parent gene
- The parent gene g13631 is located on chr_1: 31357713..31359369 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13631 | g13631.t1 | isoform | g13631.t1 | 31357713 | 31359369 |
| chr_1 | g13631 | g13631.t1 | exon | g13631.t1.exon1 | 31357713 | 31357742 |
| chr_1 | g13631 | g13631.t1 | cds | g13631.t1.CDS1 | 31357713 | 31357742 |
| chr_1 | g13631 | g13631.t1 | exon | g13631.t1.exon2 | 31357806 | 31358152 |
| chr_1 | g13631 | g13631.t1 | cds | g13631.t1.CDS2 | 31357806 | 31358152 |
| chr_1 | g13631 | g13631.t1 | exon | g13631.t1.exon3 | 31358295 | 31358877 |
| chr_1 | g13631 | g13631.t1 | cds | g13631.t1.CDS3 | 31358295 | 31358877 |
| chr_1 | g13631 | g13631.t1 | exon | g13631.t1.exon4 | 31358939 | 31358990 |
| chr_1 | g13631 | g13631.t1 | cds | g13631.t1.CDS4 | 31358939 | 31358990 |
| chr_1 | g13631 | g13631.t1 | exon | g13631.t1.exon5 | 31359176 | 31359369 |
| chr_1 | g13631 | g13631.t1 | cds | g13631.t1.CDS5 | 31359176 | 31359369 |
| chr_1 | g13631 | g13631.t1 | TSS | g13631.t1 | NA | NA |
| chr_1 | g13631 | g13631.t1 | TTS | g13631.t1 | NA | NA |
Sequences
>g13631.t1 Gene=g13631 Length=1206
ATGTTAGTCAAAGTGTGCAAATGCATTGGTAATGCAATTAGCACAAGAAAACATGAAAAA
CAAACTAGTCCACGTGAACATTGGCTTGATTATGGTGAAACAAAATATGGTCGAAAACTT
GTCCTTGAAACTAAAATTCTCTTTAACATCCTTGTACTTATTTTACCGTTGCCATTTTTC
TGGGCACTTTTCGATCAACAAGGTTCACGTTGGACATTCCAAGCAACTCGCATGGATGGC
GATATTGGCTTTTACACAATCAAACCTGATCAAATGCAAGTCGTAAATCCATTACTCATT
CTTATTTTCATTCCACTCTACGAAGTCGCATTTTATCCACTTCTCAATCTTATCGGAATT
CGGCGACCACTTCAAAAAATCACTACAAATATTCCTGGTCATACAACGATCAATGTGGCT
GCATACGAATATTGGGAGGAAAAATTCATTGATATCAATAATGGACGTCAATTCTTTTCA
TACAGTTTTAGTTCAACATCAAATGGTTGCACCGGTGATACAAATACAGGTGTTTGGCAT
GTTGAAGAGCGCACTGCAAAAAGTTTCTTCTTGACTGGAACTAATAATCTTGCTTTACAT
GAATTTGAAGACAGTACTGAGAAATCAAGACGTGGTTGGCCCTTTATCACTGTTCTTGCC
AATTTACAAACAAATAATACCAATATTAGACTTTTGGAAGATGGCAAAAATGAAAGATAT
AATGAACCACCTACATTTATGAATCAAACTGATATTCAAGCAAATAAAAACTATGAAATT
TTTGTTGGTAATACACGGGTTGCAAATGACGTTCATTTGGCTTTAGGTGGTGTTTATTCT
TTGATGATTACTCAAACATCAGCTTCAGGTTATAATGTTAAACTTGTTACTGTTACTGAT
CCCAATTCGGTTAGTATGTTATGGTTGATACCACAATATGTCATTATGACACTTGGTGAA
GTCATGTTTTCAGTCACGGGTTTGGAATTTTCATTTACACAAGCACCAGAGAGCGCGAAA
TTCTTTGATTCACAAACTTATGAGTTCTTCTTGTTTGCTGGTTTGATGTTTGTTGATATG
ATTCTCTTCAGTTGGCTTGCATATCGTTACAAAGCTATTCCATTGGAACTTTTGCAAGAT
ATTGATGAGAACAAGGATGAAAAGAAACCAGCGTTGGAATTTAACAATAACACAACCGAA
AATTAA
>g13631.t1 Gene=g13631 Length=401
MLVKVCKCIGNAISTRKHEKQTSPREHWLDYGETKYGRKLVLETKILFNILVLILPLPFF
WALFDQQGSRWTFQATRMDGDIGFYTIKPDQMQVVNPLLILIFIPLYEVAFYPLLNLIGI
RRPLQKITTNIPGHTTINVAAYEYWEEKFIDINNGRQFFSYSFSSTSNGCTGDTNTGVWH
VEERTAKSFFLTGTNNLALHEFEDSTEKSRRGWPFITVLANLQTNNTNIRLLEDGKNERY
NEPPTFMNQTDIQANKNYEIFVGNTRVANDVHLALGGVYSLMITQTSASGYNVKLVTVTD
PNSVSMLWLIPQYVIMTLGEVMFSVTGLEFSFTQAPESAKFFDSQTYEFFLFAGLMFVDM
ILFSWLAYRYKAIPLELLQDIDENKDEKKPALEFNNNTTEN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 13 | g13631.t1 | Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 1 | 141 | 1.3E-26 |
| 14 | g13631.t1 | Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 271 | 387 | 1.3E-15 |
| 3 | g13631.t1 | PANTHER | PTHR11654 | OLIGOPEPTIDE TRANSPORTER-RELATED | 1 | 128 | 7.8E-97 |
| 6 | g13631.t1 | PANTHER | PTHR11654:SF465 | - | 1 | 128 | 7.8E-97 |
| 4 | g13631.t1 | PANTHER | PTHR11654 | OLIGOPEPTIDE TRANSPORTER-RELATED | 284 | 340 | 7.8E-97 |
| 7 | g13631.t1 | PANTHER | PTHR11654:SF465 | - | 284 | 340 | 7.8E-97 |
| 5 | g13631.t1 | PANTHER | PTHR11654 | OLIGOPEPTIDE TRANSPORTER-RELATED | 339 | 376 | 7.8E-97 |
| 8 | g13631.t1 | PANTHER | PTHR11654:SF465 | - | 339 | 376 | 7.8E-97 |
| 1 | g13631.t1 | Pfam | PF00854 | POT family | 3 | 128 | 4.3E-28 |
| 2 | g13631.t1 | Pfam | PF00854 | POT family | 296 | 350 | 8.6E-8 |
| 16 | g13631.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 45 | - |
| 21 | g13631.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 46 | 64 | - |
| 18 | g13631.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 65 | 97 | - |
| 20 | g13631.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 98 | 118 | - |
| 15 | g13631.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 119 | 348 | - |
| 19 | g13631.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 349 | 368 | - |
| 17 | g13631.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 369 | 401 | - |
| 11 | g13631.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 46 | 64 | - |
| 10 | g13631.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 98 | 120 | - |
| 9 | g13631.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 304 | 326 | - |
| 12 | g13631.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 346 | 368 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0055085 | transmembrane transport | BP |
| GO:0022857 | transmembrane transporter activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed