General information for g13632.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein VAC14-like protein.
Parent gene
- The parent gene g13632 is located on chr_1: 31360163..31363750 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13632 | g13632.t1 | isoform | g13632.t1 | 31360163 | 31363750 |
| chr_1 | g13632 | g13632.t1 | exon | g13632.t1.exon1 | 31360163 | 31360475 |
| chr_1 | g13632 | g13632.t1 | cds | g13632.t1.CDS1 | 31360163 | 31360475 |
| chr_1 | g13632 | g13632.t1 | exon | g13632.t1.exon2 | 31360538 | 31360703 |
| chr_1 | g13632 | g13632.t1 | cds | g13632.t1.CDS2 | 31360538 | 31360703 |
| chr_1 | g13632 | g13632.t1 | exon | g13632.t1.exon3 | 31360760 | 31361017 |
| chr_1 | g13632 | g13632.t1 | cds | g13632.t1.CDS3 | 31360760 | 31361017 |
| chr_1 | g13632 | g13632.t1 | exon | g13632.t1.exon4 | 31361074 | 31361153 |
| chr_1 | g13632 | g13632.t1 | cds | g13632.t1.CDS4 | 31361074 | 31361153 |
| chr_1 | g13632 | g13632.t1 | exon | g13632.t1.exon5 | 31361210 | 31361372 |
| chr_1 | g13632 | g13632.t1 | cds | g13632.t1.CDS5 | 31361210 | 31361372 |
| chr_1 | g13632 | g13632.t1 | exon | g13632.t1.exon6 | 31361429 | 31361451 |
| chr_1 | g13632 | g13632.t1 | cds | g13632.t1.CDS6 | 31361429 | 31361451 |
| chr_1 | g13632 | g13632.t1 | exon | g13632.t1.exon7 | 31362808 | 31363222 |
| chr_1 | g13632 | g13632.t1 | cds | g13632.t1.CDS7 | 31362808 | 31363222 |
| chr_1 | g13632 | g13632.t1 | exon | g13632.t1.exon8 | 31363477 | 31363750 |
| chr_1 | g13632 | g13632.t1 | cds | g13632.t1.CDS8 | 31363477 | 31363750 |
| chr_1 | g13632 | g13632.t1 | TSS | g13632.t1 | NA | NA |
| chr_1 | g13632 | g13632.t1 | TTS | g13632.t1 | NA | NA |
Sequences
>g13632.t1 Gene=g13632 Length=1692
ATGCTGCCATATGCAAGTGGAATATTTTCAGCAATACTGCCATGTTTAGCTTATGAGAGC
GAATCAAAAAAGAATATCAAAGACAATGCTATTCTTGTGAATAAACTTATGCTCGATCTC
ATTTCGTCTAAAGAGAATGTAAATGTAATTGAAAACGTTGATCTTGAATCAGTTATGCAA
GTACTCAAAATGCATTTAGTTCATAGTTCTGTGAATAAAAAAGTTCATACATTGAGTTGG
ATTCATCATTTCTTCATAGAAGCTGAAAGTGAAATGTCGAAAAACGCTGGAAATTTGCTT
CCTGTTTTGTTGATAAAATCAACTAATGAACAAAATTCAGAATTTAATCAACTTAAATAT
AGAGAGTTTCTTGAAAGTCTTTTACAACTATTTCGTGAAGATAAAAATTTTCTCGATAAT
CGTGGATCATTAATAATTAAGCATCTTTGTGCACTTTTAAATGCAGAACATATCTATAGA
ACAATGGCTGAGATTTTATCAAATGACAAAGAGAATGTAAGGTTTGCATCAATAATTGTA
AGGAAGCTTAATAGTATACTTTTTACTTCATCTGAGCTGTTTGAATTACGAACGACATTG
AGAAATATTCAAAATCAAAAGTCTGCAGATCTCTTTACATGCCTCTATAAAAGTTGGTCT
CATTGCCCTATTTCTACAATTTCAATTTGCTTATTAGCAAACTGTTTTCAGCATGTGTCA
GACTTAGTTTTATTATTTGGAAATCTTGAAATGACCGTTGACTACTTAGAAGAAATTGAT
AAATTAATTCAACTCATTGAGTCACCAATTTTTGCATCTTTGAGACTTACGTTAGTGTCA
AAAAGTGCAGATTCTGAGAATCTTGCCAATGCTTTATATGGTTTACTTATGTTGATTCCT
CAAACCAAACAATTTGATTTGCTTAAAAATCGTCTTCAATGCATTCCAATATCATGCATG
ACTAATTCATCTCGCTCAGTACCATCAATAGAAAGTCAATCAGCTTTTCTAAAAGGTCAC
GATGAAAGAGTGCATAGTGATAAAGTTATTGAACCCAAGCCAAAACCACAAAACAACCTT
GTCCGATTTGTGGACTACTCGTTCAAAAGACTTCTACGCATATTAGAAACATTCACACTC
GACCAAAGAATGTTTTTTTGTGACATTTGTGGATATGGAATTTTCAATGTTAACAAATTA
AGAAGACACATGTATAAACATCTTTCAAAAGAGACTAAACGATCTTTAGTTGTTTACTCT
TGTGATTTATGTGGTGCGAAATTACATAGTAAAAATTCTATTTCGTCTCATATGAAAAAT
CTGCACCGTGAAAAAGGAAAAATGTATTCATGCTATTGTGGAAAAACGTATAGAGCAGAA
TCATATTTGAAGGTTCATCAACGATCACATGAGAAAGTGCACAAAATATTTCATACCGAA
CCTACAATTCCTTGCAATTATGTTGGAAAAATGTTTCATCGTCAATGTTTACTTGCACGT
CATATTCGTGCGCAACATGAAGTTGAATTAGGTGAATGCGAATATTGTGGAAAACAAATG
AATGTTATTTCATTACAAAGACATATTAAAGAATTTCATAGCAATCTTCCAAGAAAATTA
TGTCCTGTCACTGGCTGTACTTCATCATTTTTGAGAAAATGTCACTTGAAATCATATTCA
ACGAGTGCATAA
>g13632.t1 Gene=g13632 Length=563
MLPYASGIFSAILPCLAYESESKKNIKDNAILVNKLMLDLISSKENVNVIENVDLESVMQ
VLKMHLVHSSVNKKVHTLSWIHHFFIEAESEMSKNAGNLLPVLLIKSTNEQNSEFNQLKY
REFLESLLQLFREDKNFLDNRGSLIIKHLCALLNAEHIYRTMAEILSNDKENVRFASIIV
RKLNSILFTSSELFELRTTLRNIQNQKSADLFTCLYKSWSHCPISTISICLLANCFQHVS
DLVLLFGNLEMTVDYLEEIDKLIQLIESPIFASLRLTLVSKSADSENLANALYGLLMLIP
QTKQFDLLKNRLQCIPISCMTNSSRSVPSIESQSAFLKGHDERVHSDKVIEPKPKPQNNL
VRFVDYSFKRLLRILETFTLDQRMFFCDICGYGIFNVNKLRRHMYKHLSKETKRSLVVYS
CDLCGAKLHSKNSISSHMKNLHREKGKMYSCYCGKTYRAESYLKVHQRSHEKVHKIFHTE
PTIPCNYVGKMFHRQCLLARHIRAQHEVELGECEYCGKQMNVISLQRHIKEFHSNLPRKL
CPVTGCTSSFLRKCHLKSYSTSA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g13632.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 380 | 448 | 2.1E-9 |
| 7 | g13632.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 449 | 540 | 1.5E-9 |
| 2 | g13632.t1 | PANTHER | PTHR16023:SF0 | PROTEIN VAC14 HOMOLOG | 1 | 336 | 4.9E-83 |
| 3 | g13632.t1 | PANTHER | PTHR16023 | TAX1 BINDING PROTEIN-RELATED | 1 | 336 | 4.9E-83 |
| 1 | g13632.t1 | Pfam | PF11916 | Vacuolar protein 14 C-terminal Fig4p binding | 136 | 315 | 1.1E-63 |
| 9 | g13632.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 17 | - |
| 10 | g13632.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 4 | - |
| 11 | g13632.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 5 | 13 | - |
| 12 | g13632.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 14 | 17 | - |
| 8 | g13632.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 18 | 563 | - |
| 14 | g13632.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 387 | 407 | - |
| 13 | g13632.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 421 | 442 | - |
| 21 | g13632.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 385 | 412 | 9.016 |
| 22 | g13632.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 419 | 447 | 9.681 |
| 20 | g13632.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 449 | 470 | 8.725 |
| 19 | g13632.t1 | SMART | SM00355 | c2h2final6 | 385 | 407 | 0.017 |
| 16 | g13632.t1 | SMART | SM00355 | c2h2final6 | 419 | 442 | 0.026 |
| 15 | g13632.t1 | SMART | SM00355 | c2h2final6 | 449 | 470 | 18.0 |
| 17 | g13632.t1 | SMART | SM00355 | c2h2final6 | 483 | 506 | 47.0 |
| 18 | g13632.t1 | SMART | SM00355 | c2h2final6 | 511 | 533 | 11.0 |
| 4 | g13632.t1 | SUPERFAMILY | SSF48371 | ARM repeat | 2 | 303 | 7.94E-11 |
| 5 | g13632.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 418 | 470 | 2.07E-6 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0070772 | PAS complex | CC |
| GO:0006661 | phosphatidylinositol biosynthetic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
