General information for g13637.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Peptide transporter family 1.
Parent gene
- The parent gene g13637 is located on chr_1: 31375416..31376878 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13637 | g13637.t5 | TSS | g13637.t5 | 31373914 | 31373914 |
| chr_1 | g13637 | g13637.t5 | isoform | g13637.t5 | 31374010 | 31376878 |
| chr_1 | g13637 | g13637.t5 | exon | g13637.t5.exon1 | 31374010 | 31374037 |
| chr_1 | g13637 | g13637.t5 | cds | g13637.t5.CDS1 | 31374010 | 31374037 |
| chr_1 | g13637 | g13637.t5 | exon | g13637.t5.exon2 | 31374468 | 31374828 |
| chr_1 | g13637 | g13637.t5 | cds | g13637.t5.CDS2 | 31374468 | 31374828 |
| chr_1 | g13637 | g13637.t5 | exon | g13637.t5.exon3 | 31374891 | 31375248 |
| chr_1 | g13637 | g13637.t5 | cds | g13637.t5.CDS3 | 31374891 | 31375248 |
| chr_1 | g13637 | g13637.t5 | exon | g13637.t5.exon4 | 31375312 | 31376380 |
| chr_1 | g13637 | g13637.t5 | cds | g13637.t5.CDS4 | 31375312 | 31376380 |
| chr_1 | g13637 | g13637.t5 | exon | g13637.t5.exon5 | 31376447 | 31376529 |
| chr_1 | g13637 | g13637.t5 | cds | g13637.t5.CDS5 | 31376447 | 31376529 |
| chr_1 | g13637 | g13637.t5 | exon | g13637.t5.exon6 | 31376583 | 31376626 |
| chr_1 | g13637 | g13637.t5 | cds | g13637.t5.CDS6 | 31376583 | 31376626 |
| chr_1 | g13637 | g13637.t5 | exon | g13637.t5.exon7 | 31376685 | 31376878 |
| chr_1 | g13637 | g13637.t5 | cds | g13637.t5.CDS7 | 31376685 | 31376700 |
| chr_1 | g13637 | g13637.t5 | TTS | g13637.t5 | NA | NA |
Sequences
>g13637.t5 Gene=g13637 Length=2137
ATGTCAGAAAACGATAATAAAAATGAAACTCAACTTGAGGAGAAGCGAAAAGATGTTGAA
CAAAGTCAAGTCAAACTTAAATATCCTCGTGCAATTCCATTCATTATTAGCAATGAATTT
TGCGAGCGTTTCAATTTCTATGGAATGAAAGCCATTTTGGTACTCTTTTTGACAAGAAAG
TTGATGTATGATGATGACATTTCGACAATTATTTACCATACTTTCAATTGTCTCGTCTAT
TTCTTCTGCATCTTTGGAGCAATCATTGCTGATTCATGGTGGGGTAAATTCAATACGATT
CTCTATTTGTCGATTGTCTATGTTATCGGAAGTGGTACTATGGCGTTAGCTGCGGTCGAG
CCTTGGATTGCTATAGATCCCGGTGCAAGAGCTTTAACAATTACTGGATTGTTTTTAATT
GCATTGGGTAGTGGTGGAATTAAACCTTGTGTTGCTGCATTTGGAGGAGAACAATTTAAA
ATGCCAGAGCAAGCTAAACAATTGGCAACCTTCTTCTCGCTCTTTTATTTCTCTATAAAT
GCCGGATCTTTAATTTCAACATCTGTCACTCCAATTTTAAGAGAAGATATTCCATGTTTT
GGTATGGATGATTGTTTCCCACTTGCTTTTGGTGTACCTGCTATTTTGATGGTTGTTGCA
ATTTTATTCTTCTTATTCGGTAAATTTTTATACAAAATTCTACCAAACCAGGGCAATATG
TTAGTCAAAGTGTGCAAATGCATTGGTAATGCAATTAGCACAAGAAAACATGAAAAACAA
ACTAGTCCACGTGAACATTGGCTTGATTATGGTGAAACAAAATATGGTCGAAAACTTGTC
CTTGAAACTAAAATTCTTCTTAACATCCTTGTACTTTATTTACCGTTGCCATTTTTCTGG
GCACTTTTCGATCAACAAGGTTCACGTTGGACATTCCAAGCAACTCGCATGGATGGCGAT
ATTGGCTTTTACACAATCAAACCTGATCAAATGCAAGTCGTAAATCCATTACTCATTCTT
ATTTTCATTCCACTCTACGAAGTCGCATTTTATCCACTTCTCAATCTTATCGGAATTCGG
CGACCACTTCAAAAGTTGACATTAGGCGGTATTTTTGCTGGTGTTGCTTTCGTCATTTCA
GCTATTGTTGAGATTAATTTGGAACCAACATACGCTGTGCTTCCTGATTGGGGACAAGCT
CAGTTGAGATTTTATAATGGAAGAAATTGCAATTATAGAATCACTACAAATATTCCTGGT
CATACAACGATCAATGTGGCTGCATACGAATATTGGGAGGAAAAATTCATTGATATCAAT
AATGGACGTCAATTCTTTTCATACAGTTTTAGTTCAACATCAAATGGTTGCACCGGTGAT
ACAAATACAGGTGTTTGGCATGTTGAAGAGCGCACTGCAAAAAGTTTCTTCTTGACTGGA
ACTAATAATCTTGCTTTACATGAATTTGAAGACAGTACTGAGAAATCAAGACGTGGTTGG
CCCTTTATCACTGTTCTTGCCAATTTACAAACAAATAATACCAATATTAGACTTTTGGAA
GATGGCAAAAATGAAAGATATAATGAACCACCTACATTTATGAATCAAACTGATATTCAA
GCAAATAAAAACTATGAAATTTTTGTTGGTAATACACGGGTTGCAAATGACGTTCATTTG
GCTTTAGGTGGTGTTTATTCTTTGATGATTACTCAAACATCAGCTTCAGGTTATAATGTT
AAACTTGTTACTGTTACTGATCCCAATTCGGTTAGTATGTTATGGTTGATACCACAATAT
GTCATTATGACACTTGGTCATGTTTTCAGTCACGGGTTTGGAATTTTCATTTACACAAGC
ACCAGAGAGTATGAAATCTGTTATTCAAGGATGCTGGATGTTGACTGTTGCGTTTGGAAA
CTTGATTGTTGTCATTATCACTGGCGCGAAATTCTTTGATTCACAAACTTATGAGTTCTT
CTTGTTTGCTGGTTTGATGTTTGTTGATATGATTCTCTTCAGTTGGCTTGCATATCGTTA
CAAAGCTATTCCATTGGAACTTTTGCAAGATATTGATGAGAACAAGGATGAAAAGAAACC
AGCGTTGGAATTTAACAATAACACAACCGAAAATTAA
>g13637.t5 Gene=g13637 Length=652
MSENDNKNETQLEEKRKDVEQSQVKLKYPRAIPFIISNEFCERFNFYGMKAILVLFLTRK
LMYDDDISTIIYHTFNCLVYFFCIFGAIIADSWWGKFNTILYLSIVYVIGSGTMALAAVE
PWIAIDPGARALTITGLFLIALGSGGIKPCVAAFGGEQFKMPEQAKQLATFFSLFYFSIN
AGSLISTSVTPILREDIPCFGMDDCFPLAFGVPAILMVVAILFFLFGKFLYKILPNQGNM
LVKVCKCIGNAISTRKHEKQTSPREHWLDYGETKYGRKLVLETKILLNILVLYLPLPFFW
ALFDQQGSRWTFQATRMDGDIGFYTIKPDQMQVVNPLLILIFIPLYEVAFYPLLNLIGIR
RPLQKLTLGGIFAGVAFVISAIVEINLEPTYAVLPDWGQAQLRFYNGRNCNYRITTNIPG
HTTINVAAYEYWEEKFIDINNGRQFFSYSFSSTSNGCTGDTNTGVWHVEERTAKSFFLTG
TNNLALHEFEDSTEKSRRGWPFITVLANLQTNNTNIRLLEDGKNERYNEPPTFMNQTDIQ
ANKNYEIFVGNTRVANDVHLALGGVYSLMITQTSASGYNVKLVTVTDPNSVSMLWLIPQY
VIMTLGHVFSHGFGIFIYTSTREYEICYSRMLDVDCCVWKLDCCHYHWREIL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 23 | g13637.t5 | CDD | cd17347 | MFS_SLC15A1_2_like | 29 | 400 | 4.21804E-158 |
| 5 | g13637.t5 | Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 2 | 400 | 6.4E-116 |
| 2 | g13637.t5 | PANTHER | PTHR11654 | OLIGOPEPTIDE TRANSPORTER-RELATED | 24 | 609 | 3.5E-207 |
| 3 | g13637.t5 | PANTHER | PTHR11654:SF465 | - | 24 | 609 | 3.5E-207 |
| 1 | g13637.t5 | Pfam | PF00854 | POT family | 97 | 406 | 6.3E-89 |
| 14 | g13637.t5 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 69 | - |
| 18 | g13637.t5 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 70 | 89 | - |
| 8 | g13637.t5 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 90 | 100 | - |
| 19 | g13637.t5 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 101 | 125 | - |
| 13 | g13637.t5 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 126 | 130 | - |
| 16 | g13637.t5 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 131 | 156 | - |
| 7 | g13637.t5 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 157 | 167 | - |
| 15 | g13637.t5 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 168 | 186 | - |
| 10 | g13637.t5 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 187 | 205 | - |
| 21 | g13637.t5 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 206 | 231 | - |
| 9 | g13637.t5 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 232 | 284 | - |
| 20 | g13637.t5 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 285 | 303 | - |
| 12 | g13637.t5 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 304 | 332 | - |
| 17 | g13637.t5 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 333 | 354 | - |
| 6 | g13637.t5 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 355 | 365 | - |
| 22 | g13637.t5 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 366 | 383 | - |
| 11 | g13637.t5 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 384 | 652 | - |
| 32 | g13637.t5 | ProSitePatterns | PS01022 | PTR2 family proton/oligopeptide symporters signature 1. | 86 | 110 | - |
| 33 | g13637.t5 | ProSitePatterns | PS01023 | PTR2 family proton/oligopeptide symporters signature 2. | 172 | 184 | - |
| 4 | g13637.t5 | SUPERFAMILY | SSF103473 | MFS general substrate transporter | 6 | 383 | 4.32E-18 |
| 28 | g13637.t5 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 68 | 90 | - |
| 24 | g13637.t5 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 97 | 119 | - |
| 29 | g13637.t5 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 134 | 156 | - |
| 31 | g13637.t5 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 168 | 190 | - |
| 30 | g13637.t5 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 205 | 227 | - |
| 27 | g13637.t5 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 285 | 303 | - |
| 26 | g13637.t5 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 337 | 359 | - |
| 25 | g13637.t5 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 366 | 385 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0055085 | transmembrane transport | BP |
| GO:0006857 | oligopeptide transport | BP |
| GO:0022857 | transmembrane transporter activity | MF |
KEGG
Orthology
- This transcript has been annotated with K14638 (solute carrier family 15 (peptide/histidine transporter), member 3/4)
Pathway
This gene does not belong to any pathways.
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
