General information for g13638.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Peptide transporter family 1.
Parent gene
- The parent gene g13638 is located on chr_1: 31381093..31381686 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13638 | g13638.t1 | TSS | g13638.t1 | 31377289 | 31377289 |
| chr_1 | g13638 | g13638.t1 | isoform | g13638.t1 | 31377342 | 31381093 |
| chr_1 | g13638 | g13638.t1 | exon | g13638.t1.exon1 | 31377342 | 31377369 |
| chr_1 | g13638 | g13638.t1 | cds | g13638.t1.CDS1 | 31377342 | 31377369 |
| chr_1 | g13638 | g13638.t1 | exon | g13638.t1.exon2 | 31378835 | 31379404 |
| chr_1 | g13638 | g13638.t1 | cds | g13638.t1.CDS2 | 31378835 | 31379404 |
| chr_1 | g13638 | g13638.t1 | exon | g13638.t1.exon3 | 31379463 | 31379608 |
| chr_1 | g13638 | g13638.t1 | cds | g13638.t1.CDS3 | 31379463 | 31379608 |
| chr_1 | g13638 | g13638.t1 | exon | g13638.t1.exon4 | 31379665 | 31380630 |
| chr_1 | g13638 | g13638.t1 | cds | g13638.t1.CDS4 | 31379665 | 31380630 |
| chr_1 | g13638 | g13638.t1 | exon | g13638.t1.exon5 | 31380686 | 31381093 |
| chr_1 | g13638 | g13638.t1 | cds | g13638.t1.CDS5 | 31380686 | 31381093 |
| chr_1 | g13638 | g13638.t1 | TTS | g13638.t1 | 31381167 | 31381167 |
Sequences
>g13638.t1 Gene=g13638 Length=2118
ATGTCGACGGATAATACAAGTGAAAAAGATATAATGCCTTCAAACAGCAACGTCGGTGAT
GTTGAAAGTGATCAGAAAAAGGTGAGATATCCTTTTTCTGTCTTCTTCATTATTAGTAAT
GAATTCTGCGAGCGATTCAATTATTATGGAATGAGAACGATTTTGTCTCTCTATCTCACA
AGAAAACTTTTGTTTGACGATGACATTGCAACAATTATTTACCACTCATTTACAACACTT
GTCTACTTTTTCTGTGTTTTTGGTGCCATTTTGGCGGATTCTTTACTTGGAAAATTCCAT
ACAATTGTTTGGCTATCAATTGTCTATGTGACTGGAAGTGTCGTTATTACACTTGGAGCT
GTTGAACCTTGGAATATGCCTGCAATGGCATTGACTTTTGTTGGTTTAGGACTTATCGCA
TTGGGCAGTGGTGGAATTAAACCTTGTGTTGCAGCATTTGGCGGTGAACAATTTAAAATG
CCAGAGCAAGCTAAACAATTGGCAATTTTCTTCTCAATGTTTTATTTTTCAATTAATCTT
GGTTCTTTTATTTCAACTCTTGTTACACCGATCTTAAGAGAAAACGTTAAATGCTTTGAT
ATGGATGATTGTTATCCATTTGGATTTGGATTACCTGCTATTTTGATGGCACTTTCAATT
ATAATTTTCCTTGCTGGTAAATTTTTATACAAAATTCTACCAAATCAGGGCAATATGTTA
GTCAAAGTGTGCAAATGCATTGGTAATGCAATAAGTACAAAACGCAAGGAAAAACTTACA
AGCCCACGTGAACATTGGCTTGATTATGCTGAAGGAAAATATGGCCGAAAACTTGTTCTT
GAAACTAAAATTCTTCTTAATATTCTCGTTCTTTATATTCCACTTCCACTTTTCTGGGCA
CTTTTCGATCAACAAGGCTCACGTTGGACATTCCAAGCAACTCGCATGAATGGTGATCTC
GGATGGTTTACTATTAAACCTGATCAAATGCAAGTTATTAATCCTTTCCTCATTCTCGTC
TTCATTCCACTCTATGAAGTCGCATTTTATCCACTTCTCAATTTACTTGGTATTCGTCGT
CCTTTACAAAAAATCACATTGGGAGGAATTTTTGCTGGTGTTGCTTTCTTATGCTCAATG
GGAGTTGAAATTTATCTTGAACCGACTTATCCTGTTTTACCATCATCAGGTGAATCACAA
TTCAGAATATTTAACGGAAGACCATGTACTTATCAAGTTTCAACAAGTCTTGGTGGAAAT
GCAGCAAAGTTTGAACTTCCGCCAAATTCCTATTTTAGTGATCTTCATGTAAATGTACCA
GAGGAAACACTTAGCTTCACTTATGCACTCACAACAAATACAGCTGGATGTACAGATGTA
GAAGGAACAGGACAACTTAAAAATGGTGAAGCAAACAGTTTCTTCTTGACAGGAGCAAAT
GCTGTAACATCATACACTGATGACATTGATAAATCACGAAAAGGATTGTCATCTGTTCGT
ATTTTGGCTAATATTGAAGCAACAAGCAATGTTGTGCTTCAACATTCAAAAGAAGGAGCA
GTTTATAATGAAACAGCAAGTAAATATGACCTTGAAGAAATTCAAACAGGTGATTATGAA
ATTAAAGTGGATGGTAATGTTGTTGGAAAATATAAAATTATAATTGGTGGAGTTTATGCA
ATAATGATTCATCAAAAAGGAAACCAATATGTTACTGATGTTCTTATTGTCACCGAACCA
AATTCAGTTAGTATGTTATGGTTGATACCACAATATGTCATTATGACACTCGGTGAAGTC
ATGTATTCAGTCACAGGTCTTCAATTTTCATATACACAAGCTCCTGAAAGTATGAAGTCA
GTCTTACAAGGCTGTTGGCAGCTGACTGTTGGCGTTGGAAATTTAATCGTTACAATTATT
GTTGGTGCGAAATTCTTCAATTCGCAAACATATGAATTTTTACTGTTTGCATTGTTGATG
TTTGTTGATATGGGAATATTCATGTGGCTTGGTATTCGATATAAGCCAATTCCTCTTGAC
CAATTGAAAAATGTTGAAGAAGATGACAATGAGACCAAAAAAGCTGATCCTTTAGATTTC
AAACCTCACGACAATTAA
>g13638.t1 Gene=g13638 Length=705
MSTDNTSEKDIMPSNSNVGDVESDQKKVRYPFSVFFIISNEFCERFNYYGMRTILSLYLT
RKLLFDDDIATIIYHSFTTLVYFFCVFGAILADSLLGKFHTIVWLSIVYVTGSVVITLGA
VEPWNMPAMALTFVGLGLIALGSGGIKPCVAAFGGEQFKMPEQAKQLAIFFSMFYFSINL
GSFISTLVTPILRENVKCFDMDDCYPFGFGLPAILMALSIIIFLAGKFLYKILPNQGNML
VKVCKCIGNAISTKRKEKLTSPREHWLDYAEGKYGRKLVLETKILLNILVLYIPLPLFWA
LFDQQGSRWTFQATRMNGDLGWFTIKPDQMQVINPFLILVFIPLYEVAFYPLLNLLGIRR
PLQKITLGGIFAGVAFLCSMGVEIYLEPTYPVLPSSGESQFRIFNGRPCTYQVSTSLGGN
AAKFELPPNSYFSDLHVNVPEETLSFTYALTTNTAGCTDVEGTGQLKNGEANSFFLTGAN
AVTSYTDDIDKSRKGLSSVRILANIEATSNVVLQHSKEGAVYNETASKYDLEEIQTGDYE
IKVDGNVVGKYKIIIGGVYAIMIHQKGNQYVTDVLIVTEPNSVSMLWLIPQYVIMTLGEV
MYSVTGLQFSYTQAPESMKSVLQGCWQLTVGVGNLIVTIIVGAKFFNSQTYEFLLFALLM
FVDMGIFMWLGIRYKPIPLDQLKNVEEDDNETKKADPLDFKPHDN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 32 | g13638.t1 | CDD | cd17347 | MFS_SLC15A1_2_like | 31 | 678 | 0.0 |
| 8 | g13638.t1 | Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 2 | 401 | 3.4E-113 |
| 7 | g13638.t1 | Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 507 | 690 | 5.8E-30 |
| 45 | g13638.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 686 | 705 | - |
| 3 | g13638.t1 | PANTHER | PTHR11654 | OLIGOPEPTIDE TRANSPORTER-RELATED | 26 | 684 | 1.1E-247 |
| 4 | g13638.t1 | PANTHER | PTHR11654:SF465 | - | 26 | 684 | 1.1E-247 |
| 2 | g13638.t1 | Pfam | PF00854 | POT family | 99 | 405 | 2.5E-87 |
| 1 | g13638.t1 | Pfam | PF00854 | POT family | 563 | 641 | 1.1E-12 |
| 17 | g13638.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 71 | - |
| 30 | g13638.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 72 | 92 | - |
| 14 | g13638.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 93 | 98 | - |
| 31 | g13638.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 99 | 121 | - |
| 16 | g13638.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 122 | 126 | - |
| 24 | g13638.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 127 | 146 | - |
| 10 | g13638.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 147 | 166 | - |
| 21 | g13638.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 167 | 189 | - |
| 19 | g13638.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 190 | 208 | - |
| 27 | g13638.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 209 | 230 | - |
| 13 | g13638.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 231 | 283 | - |
| 23 | g13638.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 284 | 302 | - |
| 20 | g13638.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 303 | 331 | - |
| 29 | g13638.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 332 | 353 | - |
| 9 | g13638.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 354 | 364 | - |
| 28 | g13638.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 365 | 386 | - |
| 18 | g13638.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 387 | 584 | - |
| 22 | g13638.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 585 | 604 | - |
| 11 | g13638.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 605 | 624 | - |
| 26 | g13638.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 625 | 647 | - |
| 15 | g13638.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 648 | 652 | - |
| 25 | g13638.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 653 | 672 | - |
| 12 | g13638.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 673 | 705 | - |
| 43 | g13638.t1 | ProSitePatterns | PS01022 | PTR2 family proton/oligopeptide symporters signature 1. | 88 | 112 | - |
| 44 | g13638.t1 | ProSitePatterns | PS01023 | PTR2 family proton/oligopeptide symporters signature 2. | 171 | 183 | - |
| 6 | g13638.t1 | SUPERFAMILY | SSF103473 | MFS general substrate transporter | 25 | 380 | 8.37E-15 |
| 5 | g13638.t1 | SUPERFAMILY | SSF103473 | MFS general substrate transporter | 584 | 684 | 7.19E-6 |
| 36 | g13638.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 70 | 92 | - |
| 41 | g13638.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 99 | 121 | - |
| 39 | g13638.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 131 | 153 | - |
| 42 | g13638.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 166 | 188 | - |
| 40 | g13638.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 208 | 230 | - |
| 37 | g13638.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 284 | 302 | - |
| 34 | g13638.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 336 | 358 | - |
| 33 | g13638.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 365 | 387 | - |
| 35 | g13638.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 624 | 646 | - |
| 38 | g13638.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 653 | 672 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0055085 | transmembrane transport | BP |
| GO:0006857 | oligopeptide transport | BP |
| GO:0022857 | transmembrane transporter activity | MF |
KEGG
Orthology
- This transcript has been annotated with K14206 (solute carrier family 15 (oligopeptide transporter), member 1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
