General information for g13641.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Chitinase domain-containing protein 1.
Parent gene
- The parent gene g13641 is located on chr_1: 31393550..31394440 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13641 | g13641.t1 | TSS | g13641.t1 | 31393121 | 31393121 |
| chr_1 | g13641 | g13641.t1 | isoform | g13641.t1 | 31393201 | 31394440 |
| chr_1 | g13641 | g13641.t1 | exon | g13641.t1.exon1 | 31393201 | 31393464 |
| chr_1 | g13641 | g13641.t1 | cds | g13641.t1.CDS1 | 31393201 | 31393464 |
| chr_1 | g13641 | g13641.t1 | exon | g13641.t1.exon2 | 31393538 | 31394440 |
| chr_1 | g13641 | g13641.t1 | cds | g13641.t1.CDS2 | 31393538 | 31394440 |
| chr_1 | g13641 | g13641.t1 | TTS | g13641.t1 | 31394523 | 31394523 |
Sequences
>g13641.t1 Gene=g13641 Length=1167
ATGAAAGTTTCTATAATATTAGCTGTGTTTGCATTGATTTCATCGCAAACATCAGCGACA
TTAAATCCAAATAGCAAAAAATCAAAGCAAAAAAATCCTCAAGAAATAAAAATGAATTCC
GGACCGGTTGATAAAAGTGTTTTTGACCGTAATTTAGTTGATACTGAACCAATAGCTGCT
AAAATTGTAGCAGAAGCGAATACATATTATAAAGAGACTAATATTAAAAATTTTAATGGC
ACTGTCTTAGGATATGTAACACCGTGGAATTCTCATGGATATGAGGTGGCAAAAACATTT
GGTAAATTTAGTATTATTTCACCTGTTTGGCTACAAATTTTGAGAAAACAAGACTTAAAA
TATGAAATGGCCGGCACTCATGATTGTGATGAAAATTGGATGAGAGATGTAAGAAATGCT
GGCAATAAAAAAATTATACCAAGAGTCCTTTTTGATCATTTTACTGATCGTGATTTTTCA
AAGCTTTTAACATATCAAGAAGAAATTAATGTTGTGAACAAATTGATTGTTGAAACATGT
AAAAAGTACAATTTTGATGGTATTGTTCTTGAAGTGTGGAGTCAACTAGCAAAAAGAGTT
GATGATCAGCATTTGATTAATTTAGTTCGTAGCATAGCTAGAGCGTTGCGACAAGCAGAT
TTAAAATTTATTTTAGTAATCCCACCATCACACCGTGGTCCTGATCTTTTCAATTCACAG
CATTTTGATTTGCTATGGGAAGATGTGGATTTTTTTTCATTGATGACTTATGATTTTTCA
TCTTATGAGCGTCCAGGTGCAAATTCACCTCTTTATTGGATGAAAAATGTTGTTCTACAC
TTGTGCCCAACAGATATCAAAGAGAAAAGAGAGAAAATACTTTTAGGTCTCAATTTCTAT
GGCTATGACTTTACTCCTAATGGTGGTGAAGCTGTTTTAGGAAGTGCATATCTTAATCTT
TTAAAATATTATAAAGGAAGACTGAAATACGATGAAAAAGATCAAGAGCATTATTTTGAA
GTAAAAACTAACTCAGGGAAGCATTTCGTCTTTTATCCAACTCTCTATTCAATTCAACTT
CGTATTGATTTAGCGAGAGAATTATCGACCGGTTTATCAATTTGGGAAATCGGACAAGGA
CTTGATTATTTTTATGATTTGCTTTAA
>g13641.t1 Gene=g13641 Length=388
MKVSIILAVFALISSQTSATLNPNSKKSKQKNPQEIKMNSGPVDKSVFDRNLVDTEPIAA
KIVAEANTYYKETNIKNFNGTVLGYVTPWNSHGYEVAKTFGKFSIISPVWLQILRKQDLK
YEMAGTHDCDENWMRDVRNAGNKKIIPRVLFDHFTDRDFSKLLTYQEEINVVNKLIVETC
KKYNFDGIVLEVWSQLAKRVDDQHLINLVRSIARALRQADLKFILVIPPSHRGPDLFNSQ
HFDLLWEDVDFFSLMTYDFSSYERPGANSPLYWMKNVVLHLCPTDIKEKREKILLGLNFY
GYDFTPNGGEAVLGSAYLNLLKYYKGRLKYDEKDQEHYFEVKTNSGKHFVFYPTLYSIQL
RIDLARELSTGLSIWEIGQGLDYFYDLL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 14 | g13641.t1 | CDD | cd02876 | GH18_SI-CLP | 78 | 388 | 4.19582E-156 |
| 7 | g13641.t1 | Gene3D | G3DSA:3.20.20.80 | Glycosidases | 82 | 386 | 4.0E-112 |
| 8 | g13641.t1 | Gene3D | G3DSA:3.10.50.10 | - | 301 | 352 | 4.0E-112 |
| 17 | g13641.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 40 | - |
| 18 | g13641.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 39 | - |
| 2 | g13641.t1 | PANTHER | PTHR46066 | CHITINASE DOMAIN-CONTAINING PROTEIN 1 FAMILY MEMBER | 6 | 388 | 4.6E-105 |
| 3 | g13641.t1 | PANTHER | PTHR46066:SF2 | CHITINASE DOMAIN-CONTAINING PROTEIN 1 | 6 | 388 | 4.6E-105 |
| 1 | g13641.t1 | Pfam | PF00704 | Glycosyl hydrolases family 18 | 82 | 379 | 6.0E-23 |
| 10 | g13641.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 19 | - |
| 11 | g13641.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 2 | - |
| 12 | g13641.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 3 | 14 | - |
| 13 | g13641.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 15 | 19 | - |
| 9 | g13641.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 20 | 388 | - |
| 16 | g13641.t1 | SMART | SM00636 | 2g34 | 80 | 380 | 1.3E-11 |
| 4 | g13641.t1 | SUPERFAMILY | SSF51445 | (Trans)glycosidases | 82 | 386 | 1.25E-31 |
| 6 | g13641.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 19 | - |
| 15 | g13641.t1 | SignalP_GRAM_NEGATIVE | SignalP-noTM | SignalP-noTM | 1 | 19 | - |
| 5 | g13641.t1 | SignalP_GRAM_POSITIVE | SignalP-TM | SignalP-TM | 1 | 26 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008061 | chitin binding | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
KEGG
Orthology
- This transcript has been annotated with K17525 (chitinase domain-containing protein 1)
Pathway
This gene does not belong to any pathways.
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
