General information for g13642.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Multiple inositol polyphosphate phosphatase 1.
Parent gene
- The parent gene g13642 is located on chr_1: 31395871..31397394 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13642 | g13642.t1 | TSS | g13642.t1 | 31394645 | 31394645 |
| chr_1 | g13642 | g13642.t1 | isoform | g13642.t1 | 31394771 | 31396105 |
| chr_1 | g13642 | g13642.t1 | exon | g13642.t1.exon1 | 31394771 | 31394871 |
| chr_1 | g13642 | g13642.t1 | cds | g13642.t1.CDS1 | 31394771 | 31394871 |
| chr_1 | g13642 | g13642.t1 | exon | g13642.t1.exon2 | 31394933 | 31395871 |
| chr_1 | g13642 | g13642.t1 | cds | g13642.t1.CDS2 | 31394933 | 31395871 |
| chr_1 | g13642 | g13642.t1 | exon | g13642.t1.exon3 | 31395925 | 31396105 |
| chr_1 | g13642 | g13642.t1 | cds | g13642.t1.CDS3 | 31395925 | 31396105 |
| chr_1 | g13642 | g13642.t1 | TTS | g13642.t1 | 31396149 | 31396149 |
Sequences
>g13642.t1 Gene=g13642 Length=1221
ATGCTTAGATTTTCAACTAAAACACCTTATATATTTAAAGAACCAAATAAAATCATACAG
TATACAGATTTCGCACCAAAAAGAATATGGGCAATGTATAGACATGGAACACGATTGCCT
GGCAAAAAAATAATTTCAAAATACTTTGGTCTTATTGATATCGCAGAAAAATTACAGTTT
GCAAAAAATTTAACAGTTCAGGAGAAAGAACTTTTCAAAAATTGGAAACCTTTGAATATA
AATTTAGAACATCAAAAATTTTTAACAAAAGAAGGTGAAGAAGAGCTTTTTCAGTTAGGT
GATCGGTTTCGAAAGCAATTTCCTCAACTTATAAATAATGAATCATCGTTTACTTTTAAA
TATACACCAACACAAAGAACTGAATTGTCTGCAAAAAAATTCATAGAAGGGCTTTTTCAA
AATGATTTCTTTGATTATACATTAGAAGAAGTAGCACGTGATGATACAATATTAAGGCCT
TATAAAGGATGTAATTTATGGAGAATGAATGTGAAAAAAAATCCTCGTACTTTAATTGAG
AAAAATAATCTCATCAAATCTCAACATGTCACTGCCGTTATCAATGAATTAAGAGAAATA
ACACAAATTGATTTTTTGGATTTTAAAGACATTGAACTTATATACACAATATGCGGTTTT
GAGACAGCATGGCGTCATCATTTATACAAGGAAAAGTCAATATGGTGTTTATTATTTAAA
AATGAAGAACATTTAAAAATCATGGAATATCTTGAAGATCTCGAATATTTTTGGGTCGAT
GGACCTGCATATGAAATAACTAGAAAAGTTGCATGCAAAACAGTAACAAATATGATTGAA
CTCCTTGATCCTAAAAATAACTTTGATAAAAATATGACATTTTATTTCACACATTCAGGC
ACAATTTTAAAACTGCTAACATTTTTAGAACTTTATCAAGACAAATCGAATTTAACAGCT
GAAAAAATAGATAATGAACGCAAATGGCAAACTTCACAAATTGACACATTTTCTACAAAC
ATCATTGCCATTCTTTATGATTCAATTAGGTATGGCCCACATATTCAGTTATTACATCAA
GAGAAGATTATCAACATACCAAATTGTGTAATGAATGAACATGGCATGTGTAAATTTGAA
GATTTCAAAAATTTGTACAAAGAAAAAATTAAAGAATGTAATTTGACTGATATTTGTGAT
AATAGAAAAGAAGAGTTATAA
>g13642.t1 Gene=g13642 Length=406
MLRFSTKTPYIFKEPNKIIQYTDFAPKRIWAMYRHGTRLPGKKIISKYFGLIDIAEKLQF
AKNLTVQEKELFKNWKPLNINLEHQKFLTKEGEEELFQLGDRFRKQFPQLINNESSFTFK
YTPTQRTELSAKKFIEGLFQNDFFDYTLEEVARDDTILRPYKGCNLWRMNVKKNPRTLIE
KNNLIKSQHVTAVINELREITQIDFLDFKDIELIYTICGFETAWRHHLYKEKSIWCLLFK
NEEHLKIMEYLEDLEYFWVDGPAYEITRKVACKTVTNMIELLDPKNNFDKNMTFYFTHSG
TILKLLTFLELYQDKSNLTAEKIDNERKWQTSQIDTFSTNIIAILYDSIRYGPHIQLLHQ
EKIINIPNCVMNEHGMCKFEDFKNLYKEKIKECNLTDICDNRKEEL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g13642.t1 | CDD | cd07061 | HP_HAP_like | 88 | 342 | 0 |
| 5 | g13642.t1 | Gene3D | G3DSA:3.40.50.1240 | - | 3 | 399 | 0 |
| 2 | g13642.t1 | PANTHER | PTHR20963:SF47 | GH13296P | 2 | 403 | 0 |
| 3 | g13642.t1 | PANTHER | PTHR20963 | MULTIPLE INOSITOL POLYPHOSPHATE PHOSPHATASE-RELATED | 2 | 403 | 0 |
| 6 | g13642.t1 | PIRSF | PIRSF000894 | Acid_Ptase | 3 | 404 | 0 |
| 1 | g13642.t1 | Pfam | PF00328 | Histidine phosphatase superfamily (branch 2) | 31 | 358 | 0 |
| 4 | g13642.t1 | SUPERFAMILY | SSF53254 | Phosphoglycerate mutase-like | 4 | 403 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016791 | phosphatase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K03103 (multiple inositol-polyphosphate phosphatase / 2,3-bisphosphoglycerate 3-phosphatase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
