General information for g13642.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g13642 is located on chr_1: 31395871..31397394 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13642 | g13642.t3 | TSS | g13642.t3 | 31394645 | 31394645 |
| chr_1 | g13642 | g13642.t3 | isoform | g13642.t3 | 31394944 | 31395860 |
| chr_1 | g13642 | g13642.t3 | exon | g13642.t3.exon1 | 31394944 | 31395860 |
| chr_1 | g13642 | g13642.t3 | cds | g13642.t3.CDS1 | 31395336 | 31395860 |
| chr_1 | g13642 | g13642.t3 | TTS | g13642.t3 | 31396149 | 31396149 |
Sequences
>g13642.t3 Gene=g13642 Length=917
GATTGCCTGGCAAAAAAATAATTTCAAAATACTTTGGTCTTATTGATATCGCAGAAAAAT
TACAGTTTGCAAAAAATTTAACAGTTCAGGAGAAAGAACTTTTCAAAAATTGGAAACCTT
TGAATATAAATTTAGAACATCAAAAATTTTTAACAAAAGAAGGTGAAGAAGAGCTTTTTC
AGTTAGGTGATCGGTTTCGAAAGCAATTTCCTCAACTTATAAATAATGAATCATCGTTTA
CTTTTAAATATACACCAACACAAAGAACTGAATTGTCTGCAAAAAAATTCATAGAAGGGC
TTTTTCAAAATGATTTCTTTGATTATACATTAGAAGAAGTAGCACGTGATGATACAATAT
TAAGGCCTTATAAAGGATGTAATTTATGGAGAATGAATGTGAAAAAAAATCCTCGTACTT
TAATTGAGAAAAATAATCTCATCAAATCTCAACATGTCACTGCCGTTATCAATGAATTAA
GAGAAATAACACAAATTGATTTTTTGGATTTTAAAGACATTGAACTTATATACACAATAT
GCGGTTTTGAGACAGCATGGCGTCATCATTTATACAAGGAAAAGTCAATATGGTGTTTAT
TATTTAAAAATGAAGAACATTTAAAAATCATGGAATATCTTGAAGATCTCGAATATTTTT
GGGTCGATGGACCTGCATATGAAATAACTAGAAAAGTTGCATGCAAAACAGTAACAAATA
TGATTGAACTCCTTGATCCTAAAAATAACTTTGATAAAAATATGACATTTTATTTCACAC
ATTCAGGCACAATTTTAAAACTGCTAACATTTTTAGAACTTTATCAAGACAAATCGAATT
TAACAGCTGAAAAAATAGATAATGAACGCAAATGGCAAACTTCACAAATTGACACATTTT
CTACAAACATCATTGCC
>g13642.t3 Gene=g13642 Length=175
MNVKKNPRTLIEKNNLIKSQHVTAVINELREITQIDFLDFKDIELIYTICGFETAWRHHL
YKEKSIWCLLFKNEEHLKIMEYLEDLEYFWVDGPAYEITRKVACKTVTNMIELLDPKNNF
DKNMTFYFTHSGTILKLLTFLELYQDKSNLTAEKIDNERKWQTSQIDTFSTNIIA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g13642.t3 | CDD | cd07061 | HP_HAP_like | 39 | 174 | 0 |
| 5 | g13642.t3 | Gene3D | G3DSA:3.40.50.1240 | - | 2 | 175 | 0 |
| 2 | g13642.t3 | PANTHER | PTHR20963:SF47 | GH13296P | 2 | 174 | 0 |
| 3 | g13642.t3 | PANTHER | PTHR20963 | MULTIPLE INOSITOL POLYPHOSPHATE PHOSPHATASE-RELATED | 2 | 174 | 0 |
| 1 | g13642.t3 | Pfam | PF00328 | Histidine phosphatase superfamily (branch 2) | 12 | 173 | 0 |
| 4 | g13642.t3 | SUPERFAMILY | SSF53254 | Phosphoglycerate mutase-like | 24 | 174 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
