General information for g13664.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A.
Parent gene
- The parent gene g13664 is located on chr_1: 31465630..31466626 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13664 | g13664.t3 | TTS | g13664.t3 | 31465548 | 31465548 |
| chr_1 | g13664 | g13664.t3 | isoform | g13664.t3 | 31465630 | 31466626 |
| chr_1 | g13664 | g13664.t3 | exon | g13664.t3.exon1 | 31465630 | 31466128 |
| chr_1 | g13664 | g13664.t3 | cds | g13664.t3.CDS1 | 31466076 | 31466128 |
| chr_1 | g13664 | g13664.t3 | exon | g13664.t3.exon2 | 31466205 | 31466448 |
| chr_1 | g13664 | g13664.t3 | cds | g13664.t3.CDS2 | 31466205 | 31466448 |
| chr_1 | g13664 | g13664.t3 | exon | g13664.t3.exon3 | 31466504 | 31466626 |
| chr_1 | g13664 | g13664.t3 | cds | g13664.t3.CDS3 | 31466504 | 31466626 |
| chr_1 | g13664 | g13664.t3 | TSS | g13664.t3 | 31466692 | 31466692 |
Sequences
>g13664.t3 Gene=g13664 Length=866
ATGAGTTTTACAAAACCGGAAAGAGTGATAAATGAAGGAGACACTGTAATCCTTTACATC
ACAATAAATAACATGCATGCAATTGAAGTAAAATCACATACTACAAATAAACATGGTCAA
AAGGTAGAATATGTACATCAAACAGCATATGGAGCACTTAAAGTGCAAAGTCTCATTGGA
AAGGAATATGGTACAAAAATTCATCTACCAAAAGGATATGCTTTCATACTTCAGATGAAT
CCTGAATTGTGGACAATGAGTTTGCCACACCGCACACAAATTCTCTATACACCTGATATT
TCAATGATTTTAATGCAATTAGAAATTCAACCTAGTTCTGTTATTATTGAAGCTGGTACA
GGCTCTGAGTTGATCAGGCGAGAGAAGAGTTTCAAAAACATGGTTTTGGCAACTTTGTAA
CAGCACAACATCGTGATGTGGTCTCTGATGGATTTACTGATGATTTAAATGGTAAAGCAG
ATGCAATTTTTCTAGATCTCCCAGCACCTTACAAAGCAATCGATCATGTAGTTAAAGCAT
TAAAGCCAAGCGGAGGAAGATTTTGTGCATTCAGTCCATGTATTGAGCAGACTCAAGAAA
CCTGTCTTCAACTTGAAAAGTATGGCTTTCTTGAAATTCATACAATTGAAATTCTTCAAT
CAGAACATATTGTTAGGGAAAAAAATATTCCCGTTATGGATCTATCATTTGTTAAACAAA
AACGAGAAGATACTGAATCAAAACTTCCAAAAAGAGATGAAAAGAGACCGCAACTGCCAA
CTCGTAAAATTTTGACAACATTAAACACACCAATTCAACAAGGTCATACTGGATATTTAA
CATTTGCCACTTTCTTAAGAATTTGA
>g13664.t3 Gene=g13664 Length=139
MSFTKPERVINEGDTVILYITINNMHAIEVKSHTTNKHGQKVEYVHQTAYGALKVQSLIG
KEYGTKIHLPKGYAFILQMNPELWTMSLPHRTQILYTPDISMILMQLEIQPSSVIIEAGT
GSELIRREKSFKNMVLATL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g13664.t3 | Gene3D | G3DSA:3.10.330.20 | - | 1 | 79 | 0.000 |
| 6 | g13664.t3 | Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 81 | 123 | 0.000 |
| 2 | g13664.t3 | PANTHER | PTHR12133 | TRNA (ADENINE(58)-N(1))-METHYLTRANSFERASE | 1 | 123 | 0.000 |
| 3 | g13664.t3 | PANTHER | PTHR12133:SF2 | TRNA (ADENINE(58)-N(1))-METHYLTRANSFERASE CATALYTIC SUBUNIT TRMT61A | 1 | 123 | 0.000 |
| 1 | g13664.t3 | Pfam | PF08704 | tRNA methyltransferase complex GCD14 subunit | 72 | 123 | 0.000 |
| 7 | g13664.t3 | ProSiteProfiles | PS51620 | tRNA (adenine(57)-N(1)/adenine(58)-N(1) or adenine(58)-N(1)) (EC 2.1.1.219 or EC 2.1.1.220) family profile. | 13 | 122 | 26.818 |
| 4 | g13664.t3 | SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 9 | 122 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0031515 | tRNA (m1A) methyltransferase complex | CC |
| GO:0030488 | tRNA methylation | BP |
| GO:0016429 | tRNA (adenine-N1-)-methyltransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
