Gene loci information

Transcript annotation

  • This transcript has been annotated as Apoptosis-inducing factor 3.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13666 g13666.t1 TTS g13666.t1 31473555 31473555
chr_1 g13666 g13666.t1 isoform g13666.t1 31473945 31475883
chr_1 g13666 g13666.t1 exon g13666.t1.exon1 31473945 31474507
chr_1 g13666 g13666.t1 cds g13666.t1.CDS1 31473945 31474507
chr_1 g13666 g13666.t1 exon g13666.t1.exon2 31474562 31474867
chr_1 g13666 g13666.t1 cds g13666.t1.CDS2 31474562 31474867
chr_1 g13666 g13666.t1 exon g13666.t1.exon3 31474928 31474972
chr_1 g13666 g13666.t1 cds g13666.t1.CDS3 31474928 31474972
chr_1 g13666 g13666.t1 exon g13666.t1.exon4 31475360 31475758
chr_1 g13666 g13666.t1 cds g13666.t1.CDS4 31475360 31475758
chr_1 g13666 g13666.t1 exon g13666.t1.exon5 31475811 31475883
chr_1 g13666 g13666.t1 cds g13666.t1.CDS5 31475811 31475883
chr_1 g13666 g13666.t1 TSS g13666.t1 31476031 31476031

Sequences

>g13666.t1 Gene=g13666 Length=1386
ATGGGAGCAGGTTGTTGTAAAAATAGAATTGCTGAACAACCAAATGTCAAAAAAATTCTT
GTAAAGCCTAAAGATTCTAAAACAGCACAGCAAAATGGTCACGTATCTGTTAAAGATGAT
GATGACTACATTGAAAAGGTAGTTTGTCACGAAAATGATATAGGAGAAAATGAAATGAAA
AATTTTGAGATTGGTGATACGAAAGTACTCGTTATCAAGCAAAATGGAATATCTGCAATT
GGCGCAAAGTGCTCTCATTATGGAGCATATCTATCAATGGGAGCTTTAGGTGATGGCAGA
GTTCGCTGTCCCTGGCATGGTGCATGTTTCAATATTAAAACTGGAGACATTGAAGATTTT
CCTGGTCAAGATTCACTTCCATGTTATCAAGTGAAAATTTCCGAAGCAGGACAAGTTGTT
GTAAGAGCTAAGAAATCAGCATTGAAGTTATATAAACGACAACCAGTGAAAATTGGGCGT
GACTTGTTAAATCAACAAACATTCGTAATTATTGGAGGTGGCCCCAGTGGAACAATTTGT
GTTGAAAACTTGCGATCAAATGGTTTTGGTGGACGCATAGTTTTTGTTTGTAAAGAAAAC
TATCTTCCTTATGATCGAGTAAAAGTTAGCAAAGCAATGGATGCTGAAATTGATAGCATT
TTGCTTAGACCACAATCATTCTATGATAACTATGATATTGAAGTAATACTCGGTGTGGCT
GCTACTGGACTTAATTCTGAGACTAGAGAAATTTCTTTAAGCAATGGTGAAAAATTAAAA
TATGACAAAGTTTACATTGCAACAGGAAGTTCACCATCAAAATTGGATGTTCCTGGAATT
GATTTGAAAAATATCGTAACATTACGAGATATTGATGAGTCAAAATATATTATTGAACGT
ATTAATAAAGATACACATATTGTTGTACTTGGTGTAAGTTTCACAGGTATGGAAGCAGCT
GCATTTTGTGTAAAAAAAGTTGCAAAAGTGACAGTAATTGGACGTGATTCGATACCATTT
CGACATTCTTTTGGTGCTGAAATTGGAGGCGCAATTTTAAAGTTCTTTAAAGCCAACAAA
GTCGAATTTGAAATGAAAAGTGGAATCAAAAGCTGCATTGGCAATGAGAAAGGAGAAATT
GAAAGTGTTGAATTGATTGATGGAAAAATTTTGAAATGTGACTTGTTTATTCTTGCATGT
GGTAGTTATCTTAACACTGAATTCTTAAAGGAAAGTGGTATAAATATAAATCAAAATGGA
TCAATTGACACTGATGAGTATTTACAGACAAATATTGAGAATATTTATGTGGGAGGTGAC
ATTGCAAATAGCCCAATTTATATGACTGGTAAGAATGAAAATATCGGACATTATCCTTTA
GCATAG

>g13666.t1 Gene=g13666 Length=461
MGAGCCKNRIAEQPNVKKILVKPKDSKTAQQNGHVSVKDDDDYIEKVVCHENDIGENEMK
NFEIGDTKVLVIKQNGISAIGAKCSHYGAYLSMGALGDGRVRCPWHGACFNIKTGDIEDF
PGQDSLPCYQVKISEAGQVVVRAKKSALKLYKRQPVKIGRDLLNQQTFVIIGGGPSGTIC
VENLRSNGFGGRIVFVCKENYLPYDRVKVSKAMDAEIDSILLRPQSFYDNYDIEVILGVA
ATGLNSETREISLSNGEKLKYDKVYIATGSSPSKLDVPGIDLKNIVTLRDIDESKYIIER
INKDTHIVVLGVSFTGMEAAAFCVKKVAKVTVIGRDSIPFRHSFGAEIGGAILKFFKANK
VEFEMKSGIKSCIGNEKGEIESVELIDGKILKCDLFILACGSYLNTEFLKESGININQNG
SIDTDEYLQTNIENIYVGGDIANSPIYMTGKNENIGHYPLA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
21 g13666.t1 CDD cd03478 Rieske_AIFL_N 47 139 0.0000000
19 g13666.t1 Gene3D G3DSA:2.102.10.10 - 43 153 0.0000000
18 g13666.t1 Gene3D G3DSA:3.50.50.60 - 169 458 0.0000000
17 g13666.t1 Gene3D G3DSA:3.50.50.60 - 274 400 0.0000000
3 g13666.t1 PANTHER PTHR43557 APOPTOSIS-INDUCING FACTOR 1 46 461 0.0000000
4 g13666.t1 PANTHER PTHR43557:SF7 APOPTOSIS-INDUCING FACTOR MITOCHONDRIA-ASSOCIATED 4 46 461 0.0000000
10 g13666.t1 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 167 189 0.0000001
8 g13666.t1 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 168 187 0.0000000
5 g13666.t1 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 261 279 0.0000000
7 g13666.t1 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 306 324 0.0000000
13 g13666.t1 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 306 331 0.0000001
9 g13666.t1 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 393 409 0.0000000
11 g13666.t1 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 394 408 0.0000001
6 g13666.t1 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 420 442 0.0000000
12 g13666.t1 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 435 442 0.0000001
1 g13666.t1 Pfam PF00355 Rieske [2Fe-2S] domain 47 129 0.0000000
2 g13666.t1 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 168 446 0.0000000
20 g13666.t1 ProSiteProfiles PS51296 Rieske [2Fe-2S] iron-sulfur domain profile. 46 140 22.8270000
14 g13666.t1 SUPERFAMILY SSF50022 ISP domain 46 142 0.0000000
15 g13666.t1 SUPERFAMILY SSF51905 FAD/NAD(P)-binding domain 166 351 0.0000000
16 g13666.t1 SUPERFAMILY SSF51905 FAD/NAD(P)-binding domain 301 445 0.0000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0051537 2 iron, 2 sulfur cluster binding MF
GO:0055114 NA NA
GO:0016491 oxidoreductase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values