General information for g13674.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial.
Parent gene
- The parent gene g13674 is located on chr_1: 31500776..31502322 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13674 | g13674.t3 | isoform | g13674.t3 | 31500010 | 31500973 |
| chr_1 | g13674 | g13674.t3 | exon | g13674.t3.exon1 | 31500010 | 31500973 |
| chr_1 | g13674 | g13674.t3 | cds | g13674.t3.CDS1 | 31500027 | 31500776 |
| chr_1 | g13674 | g13674.t3 | TTS | g13674.t3 | 31500972 | 31500972 |
| chr_1 | g13674 | g13674.t3 | TSS | g13674.t3 | NA | NA |
Sequences
>g13674.t3 Gene=g13674 Length=964
CAAATGTTAACTTCCTCATGGATTTAGCTCGTCATGAATATTTCCAAAAAGGAGATGTTC
ATACAGGTTTCATTAATCAACACTTTGATACACTCTTTCCTCAGAAAGTAATTAAAAATG
AAATCTTAGCACAAGCAGCTCTTGGTTTAATTATTAATGAAAATAATTCTGCATTAATTA
ACTCATTAAGAGAAGGAAAATTGAATGATCCGTTTGCAATTAATAGTGATTTTAGAATCA
ATTCAACTCATGTAAGAACTGTGAAGTTTTTTGCTAATGAAAAAGAGCAACAAGTGTCAG
TTATGCAAATTCAAGACGGTTACAAAGTCAAAGTCAATGATGGCGAATGGAAAAATGTTC
AAGTTACAAAAGTAAAAGAAGAGGGAAGATTTACATTAAAAGTCAACATGGAAGGTGTTG
TCTACAAATATTCAATTGTAATCACACCAGAGAGTGTCACATTATTCAATGAAAGTGGCA
AAACTGAGCTACAAATCAAACAACCAAAGTTCTTAGAAACAACAAGCGGAAGTGATGGAA
GCAAAGCAAGTTTAAGTGCTCCAATGCCTGGAATTATTGATAAAATTTTCGTCAATGTCG
GAGATGAAGTGAAGCCAGGTCAAAGTGTTGCAGTTATTATTGCCATGAAGATGGAATATG
TTCTTAAAGCAGCTGTAAGTGGCAAAGTCAAATCAATTGCAGGAAAAATTGGTGACAACA
TTGGAAAAGGGGTCACAATTGTCGAAATTGAAGCAACAGAGGAATAAGTCCAAATCTGCA
CAATGCGTAGCAGAAGCAATACAAAGTGCATTTATTAGATGTTAAGAAAAAAAAGAATTT
ATTGTTGCATTTATTAAATTTATTCTTCCAAAATATTTGGTTTTACTAAAGAGAAAAGAT
TATGATGTTTAGTTAAAAACTCTTGTGGTTTATGGTGCCAATAAAAATTTTGTTTTCATC
ATTT
>g13674.t3 Gene=g13674 Length=249
MDLARHEYFQKGDVHTGFINQHFDTLFPQKVIKNEILAQAALGLIINENNSALINSLREG
KLNDPFAINSDFRINSTHVRTVKFFANEKEQQVSVMQIQDGYKVKVNDGEWKNVQVTKVK
EEGRFTLKVNMEGVVYKYSIVITPESVTLFNESGKTELQIKQPKFLETTSGSDGSKASLS
APMPGIIDKIFVNVGDEVKPGQSVAVIIAMKMEYVLKAAVSGKVKSIAGKIGDNIGKGVT
IVEIEATEE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g13674.t3 | CDD | cd06850 | biotinyl_domain | 179 | 244 | 4.41921E-22 |
| 6 | g13674.t3 | Gene3D | G3DSA:2.40.50.100 | - | 171 | 248 | 2.4E-19 |
| 2 | g13674.t3 | PANTHER | PTHR18866:SF33 | METHYLCROTONOYL-COA CARBOXYLASE SUBUNIT ALPHA, MITOCHONDRIAL-RELATED | 2 | 245 | 1.5E-29 |
| 3 | g13674.t3 | PANTHER | PTHR18866 | CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE | 2 | 245 | 1.5E-29 |
| 1 | g13674.t3 | Pfam | PF00364 | Biotin-requiring enzyme | 179 | 244 | 3.4E-13 |
| 5 | g13674.t3 | ProSitePatterns | PS00188 | Biotin-requiring enzymes attachment site. | 201 | 218 | - |
| 7 | g13674.t3 | ProSiteProfiles | PS50968 | Biotinyl/lipoyl domain profile. | 170 | 245 | 21.254 |
| 4 | g13674.t3 | SUPERFAMILY | SSF51230 | Single hybrid motif | 172 | 245 | 7.46E-17 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
