Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Dolichyl-diphosphooligosaccharide–protein glycosyltransferase 48 kDa subunit.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13675 g13675.t5 isoform g13675.t5 31500776 31502322
chr_1 g13675 g13675.t5 exon g13675.t5.exon1 31500776 31500894
chr_1 g13675 g13675.t5 cds g13675.t5.CDS1 31500869 31500894
chr_1 g13675 g13675.t5 exon g13675.t5.exon2 31501155 31502162
chr_1 g13675 g13675.t5 cds g13675.t5.CDS2 31501155 31501557
chr_1 g13675 g13675.t5 exon g13675.t5.exon3 31502224 31502322
chr_1 g13675 g13675.t5 TSS g13675.t5 31502399 31502399
chr_1 g13675 g13675.t5 TTS g13675.t5 NA NA

Sequences

>g13675.t5 Gene=g13675 Length=1226
CTTCTTCAGGCTATGCAGATCAGAAAAAGGATACTCTAGTTTTGTTAGATAACTTGGCTA
CAAGAGAAACTCATTCGATTTTCTTTAAAAATTTACAAGATCGTGAATTTAAGCTCACAT
TTAAACTAGCTGATGACTCAAATCTTGTCTTATCTAGATATGGAGAGTATTTGTATCAAA
ATCTCATCATTTTTGCACCATCAGTTGAAGAATTTGGTGGATCAATTTCAGTGGAAGCGA
TTACTCAATTCATCGATGACGGAGGAAATGTATTAGTCGCAGCTTCATCAACTTCCGGAG
AAGCTATTCGTGAACTTGCATCAGAAGTTGGTTTTGAGATTGATGAAGAAAATGCAGCTG
TTATTGATCATTTGAACTATGACCAACTTCTCGATTCTGGTGATCACACAACGATCGTTG
CATCGCCTAAAAATTTGATTGATTCAGAAATTATTGTCGGTAGCAAAAACATCAATCCGC
TTTTATTCAAAGGAACTGGAATTTTGGCTGATCGTGAAAATCAACTCGTACTTCCTCTTC
TCACTGGTGATGCCACTGCATACAGTTATATTCCTGATTCGCCTATTAAAGAATATCCAC
ATGCTGTCGGTAAAGGAACAATTTTAATTGCAGCTCTTCAAGCACGCAACAATGCTCGTG
TTGTTTTCTCTGGCTCACTTTACTTCTTTTCTGATGATGCCATTATGTCACAAATTAAAA
AAGTTGGTGATAATCAAGTGCATGACAAATCTGGTAATCTTAATGTTATTAACGCTATCA
GCAAATGGGTATTTAAAGAAGCAGGTCAAATTCGTGTCAAATCAGTCAGTCATCATAAAG
ATGGAGAGAAACAAGCTCCTGCTAGCTATACAATCACTGATCCTGTTGTTTATACAATCG
AAGTTGAACAATTGATTGATGGAAAATGGAAACCATTTGTTGCTAGTGATATTCAAGTTG
AATTTGTTCGCATTGATCCATTTGTGAGACTCACATTGAAATCAATTGGCGGTGGAAAAT
ATCAATCTAAATTCAAAATTCCTGATGTGTATGGAGTTTATCAATTCAAAGTAGAATATG
ATCGAGTTGGATTCACAAGACTTTATATAAAACCAAATATTTTGGAAGAATAAATTTAAT
AAATGCAACAATAAATTCTTTTTTTTCTTAACATCTAATAAATGCACTTTGTATTGCTTC
TGCTACGCATTGTGCAGATTTGGACT

>g13675.t5 Gene=g13675 Length=142
MSQIKKVGDNQVHDKSGNLNVINAISKWVFKEAGQIRVKSVSHHKDGEKQAPASYTITDP
VVYTIEVEQLIDGKWKPFVASDIQVEFVRIDPFVRLTLKSIGGGKYQSKFKIPDVYGVYQ
FKVEYDRVGFTRLYIKPNILEE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g13675.t5 PANTHER PTHR10830:SF0 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE–PROTEIN GLYCOSYLTRANSFERASE 48 KDA SUBUNIT 2 137 0
3 g13675.t5 PANTHER PTHR10830 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE–PROTEIN GLYCOSYLTRANSFERASE 48 KDA SUBUNIT 2 137 0
1 g13675.t5 Pfam PF03345 Oligosaccharyltransferase 48 kDa subunit beta 12 135 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0018279 protein N-linked glycosylation via asparagine BP
GO:0005789 endoplasmic reticulum membrane CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed