General information for g13675.t9
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Dolichyl-diphosphooligosaccharide–protein glycosyltransferase 48 kDa subunit.
Parent gene
- The parent gene g13675 is located on chr_1: 31501155..31506482 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13675 | g13675.t9 | TTS | g13675.t9 | 31500856 | 31500856 |
| chr_1 | g13675 | g13675.t9 | isoform | g13675.t9 | 31501155 | 31501498 |
| chr_1 | g13675 | g13675.t9 | exon | g13675.t9.exon1 | 31501155 | 31501498 |
| chr_1 | g13675 | g13675.t9 | cds | g13675.t9.CDS1 | 31501156 | 31501497 |
| chr_1 | g13675 | g13675.t9 | TSS | g13675.t9 | 31502399 | 31502399 |
Sequences
>g13675.t9 Gene=g13675 Length=344
TGTTATTAACGCTATCAGCAAATGGGTATTTAAAGAAGCAGGTCAAATTCGTGTCAAATC
AGTCAGTCATCATAAAGATGGAGAGAAACAAGCTCCTGCTAGCTATACAATCACTGATCC
TGTTGTTTATACAATCGAAGTTGAACAATTGATTGATGGAAAATGGAAACCATTTGTTGC
TAGTGATATTCAAGTTGAATTTGTTCGCATTGATCCATTTGTGAGACTCACATTGAAATC
AATTGGCGGTGGAAAATATCAATCTAAATTCAAAATTCCTGATGTGTATGGAGTTTATCA
ATTCAAAGTAGAATATGATCGAGTTGGATTCACAAGACTTTATA
>g13675.t9 Gene=g13675 Length=114
VINAISKWVFKEAGQIRVKSVSHHKDGEKQAPASYTITDPVVYTIEVEQLIDGKWKPFVA
SDIQVEFVRIDPFVRLTLKSIGGGKYQSKFKIPDVYGVYQFKVEYDRVGFTRLY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g13675.t9 | PANTHER | PTHR10830:SF0 | DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE–PROTEIN GLYCOSYLTRANSFERASE 48 KDA SUBUNIT | 3 | 113 | 0 |
| 3 | g13675.t9 | PANTHER | PTHR10830 | DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE–PROTEIN GLYCOSYLTRANSFERASE 48 KDA SUBUNIT | 3 | 113 | 0 |
| 1 | g13675.t9 | Pfam | PF03345 | Oligosaccharyltransferase 48 kDa subunit beta | 2 | 113 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0018279 | protein N-linked glycosylation via asparagine | BP |
| GO:0005789 | endoplasmic reticulum membrane | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
