General information for g13703.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Homeotic protein ocelliless.
Parent gene
- The parent gene g13703 is located on chr_1: 31873475..31879181 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13703 | g13703.t4 | TSS | g13703.t4 | 31841667 | 31841667 |
| chr_1 | g13703 | g13703.t4 | isoform | g13703.t4 | 31841668 | 31861263 |
| chr_1 | g13703 | g13703.t4 | exon | g13703.t4.exon1 | 31841668 | 31842153 |
| chr_1 | g13703 | g13703.t4 | exon | g13703.t4.exon2 | 31851675 | 31851956 |
| chr_1 | g13703 | g13703.t4 | cds | g13703.t4.CDS1 | 31851779 | 31851956 |
| chr_1 | g13703 | g13703.t4 | exon | g13703.t4.exon3 | 31861097 | 31861263 |
| chr_1 | g13703 | g13703.t4 | cds | g13703.t4.CDS2 | 31861097 | 31861263 |
| chr_1 | g13703 | g13703.t4 | TTS | g13703.t4 | NA | NA |
Sequences
>g13703.t4 Gene=g13703 Length=935
AGTCTTTCCATTTCTTTCATCACGTCAAGATCGCTTTGCCACTGTGCTCGCACGTAGATA
TACACAAATATATATTTACACTAACGTTAAAAGGAAAATTTGTATAGTTCGAGAGAAAAA
AGGCAAATAAATAAAATTCGCTTTTTTGTTGTTTGACAAAAAATATTATAGTTTTTTTGT
GTACGCGTGTGAAATTGACAAAACAAAAAGTTTTTTTTAATTTAAATATAAACAAAAGAA
AAGAATTACAAAAAGGAATAATTGTATAAAAGTGTCAATGATGAGAAACTAAGTGAAAAT
CACGAGGATAACAATCAAAATTGAATGGATAATTAAAAGAATTAAAAGTACGGATAAAAA
GAAATCATTTGACGACGCAAAAGAGTGAAGTTTTATAAAAAATCACTGAACAAAAAAATC
ACAGTTGGAGTGGATTGCGGAACTAATAAAACACATATACACACTAAAAAACGTTTAGAT
AAATTGATCTCAACAACAGAAATTTACAATCAAGCAAAATAAATTCTCTTGAGGTGAATT
TTGACGAGAAAAATCTTTCTGCCGTGGCGCTGCACTCGACTGAAGCCCTAATGGCGGGCT
TTCTTAAAACAACTGATCTCGGTGCACATCCGCACAGCTATGGAGCGCCACATCATCCTC
ATCACAGCCACGGTCCACCATTGCCACCTGGAATGCCAATGACAATGACACCATTTGGAT
TACCACATGGTCTCGACGCTGTTGGCTTTCCACATCAAGGTATGTGGGGCGTAAATCCAA
GAAAGCAACGCAGAGAGCGAACAACATTTACAAGAGCACAATTAGATGTGCTTGAATCAC
TTTTTGGCAAAACTAGATATCCTGATATATTTATGCGCGAGGAAGTTGCACTTAAAATCA
ATTTGCCAGAATCAAGAGTTCAGTATGTTCATTAA
>g13703.t4 Gene=g13703 Length=114
MAGFLKTTDLGAHPHSYGAPHHPHHSHGPPLPPGMPMTMTPFGLPHGLDAVGFPHQGMWG
VNPRKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQYVH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g13703.t4 | CDD | cd00086 | homeodomain | 67 | 111 | 2.08021E-14 |
| 5 | g13703.t4 | Gene3D | G3DSA:1.10.10.60 | - | 60 | 114 | 4.3E-18 |
| 8 | g13703.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 34 | - |
| 2 | g13703.t4 | PANTHER | PTHR45793 | HOMEOBOX PROTEIN | 7 | 111 | 3.1E-43 |
| 3 | g13703.t4 | PANTHER | PTHR45793:SF5 | HOMEOTIC PROTEIN OCELLILESS | 7 | 111 | 3.1E-43 |
| 1 | g13703.t4 | Pfam | PF00046 | Homeodomain | 67 | 112 | 4.1E-13 |
| 9 | g13703.t4 | ProSiteProfiles | PS50071 | ‘Homeobox’ domain profile. | 64 | 114 | 11.062 |
| 7 | g13703.t4 | SMART | SM00389 | HOX_1 | 66 | 114 | 2.8E-4 |
| 4 | g13703.t4 | SUPERFAMILY | SSF46689 | Homeodomain-like | 51 | 112 | 3.29E-15 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003677 | DNA binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed