General information for g13703.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g13703 is located on chr_1: 31873475..31879181 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13703 | g13703.t5 | isoform | g13703.t5 | 31873475 | 31879181 |
| chr_1 | g13703 | g13703.t5 | exon | g13703.t5.exon1 | 31873475 | 31873629 |
| chr_1 | g13703 | g13703.t5 | cds | g13703.t5.CDS1 | 31873579 | 31873629 |
| chr_1 | g13703 | g13703.t5 | exon | g13703.t5.exon2 | 31878201 | 31879181 |
| chr_1 | g13703 | g13703.t5 | cds | g13703.t5.CDS2 | 31878201 | 31879181 |
| chr_1 | g13703 | g13703.t5 | TSS | g13703.t5 | NA | NA |
| chr_1 | g13703 | g13703.t5 | TTS | g13703.t5 | NA | NA |
Sequences
>g13703.t5 Gene=g13703 Length=1136
GCGTAAATCCAAGAAAGCAACGCAGAGAGCGAACAACATTTACAAGAGCACAATTAGATG
TGCTTGAATCACTTTTTGGCAAAACTAGATATCCTGATATATTTATGCGCGAGGAAGTTG
CACTTAAAATCAATTTGCCAGAATCAAGAGTTCAGGTATGGTTTAAAAATCGGCGCGCAA
AATGCCGTCAACAACTTCAACATCAAACCTCATCATCATCATCGAATCTCAATAGTTCAA
AATCATCATCGAGCTCATCAACGCGTAATTCAAATTCGACATCAGCGTCAACGTCCTCGT
CGAGTAAAACGACCAATACGACAAGCAACTCCACTAATTCTAGCGGCACCAAGTCATCAC
ATATAAAGGTGACACCAACGCATGCACTGTCGGCAAATCCAAGCAACAATAACAACAATT
CTGGCAATTCTAATAATAATAATAACAACAATACATCGAATAGCACGAGTGCAACTTCGA
ATGCCGTTAATAGTAGTTTAGGTGCTTTGAGCACATCCAATCATCATTCGACATCATCGC
CTATTCTTCCTATAACACCATCAACATCGGTGAGTCCTCCGATTAATGTTATATGCAAGA
AAGAACTGCCATATCATCACCAAAATGGACTTGGCAATCATCAAGGTATGAACAATGGCT
CAATGGATATTAAACCGGGCTCGGGTGCAAGTTCAGGCTACGACAGTCTCAAGGATAGTG
ATTTGGGTATCACATCAGTGCATCATGCATCATATCTTAATATAAATTCACGTTTGAGTC
AAACTGGTGGCAATTTAACACCACTTGGTTCAAATTCATCAATTATGACAACACCTTCGC
CACCAATCACGCCTCAGGCAAGTGGACCACTTTCATATGTTCCCAATCATGAGTCCTACA
ATTTCTGGCATAATCAATATAATCAGTACAATCCAAACAATTATAATACACCATATTATA
CAACACAAATGGACTATTTCAATAATCAAAGCCAATCGGGATATAATATGAGTCACTCGG
GATACTCGCCATCAAATTTTGGCCTCTCAGGTGGTGCAATGAGTGGCGCAATGGCCTCAC
AGACATTCTCTTCTGATTACATGACACAGCAAGATAAATATGTAAATATGGTATAG
>g13703.t5 Gene=g13703 Length=343
MREEVALKINLPESRVQVWFKNRRAKCRQQLQHQTSSSSSNLNSSKSSSSSSTRNSNSTS
ASTSSSSKTTNTTSNSTNSSGTKSSHIKVTPTHALSANPSNNNNNSGNSNNNNNNNTSNS
TSATSNAVNSSLGALSTSNHHSTSSPILPITPSTSVSPPINVICKKELPYHHQNGLGNHQ
GMNNGSMDIKPGSGASSGYDSLKDSDLGITSVHHASYLNINSRLSQTGGNLTPLGSNSSI
MTTPSPPITPQASGPLSYVPNHESYNFWHNQYNQYNPNNYNTPYYTTQMDYFNNQSQSGY
NMSHSGYSPSNFGLSGGAMSGAMASQTFSSDYMTQQDKYVNMV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g13703.t5 | CDD | cd00086 | homeodomain | 1 | 30 | 1.9824E-10 |
| 5 | g13703.t5 | Gene3D | G3DSA:1.10.10.60 | - | 1 | 32 | 2.5E-11 |
| 9 | g13703.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 88 | - |
| 8 | g13703.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 133 | 152 | - |
| 2 | g13703.t5 | PANTHER | PTHR45793 | HOMEOBOX PROTEIN | 1 | 199 | 1.7E-23 |
| 3 | g13703.t5 | PANTHER | PTHR45793:SF5 | HOMEOTIC PROTEIN OCELLILESS | 1 | 199 | 1.7E-23 |
| 1 | g13703.t5 | Pfam | PF00046 | Homeodomain | 2 | 29 | 1.3E-8 |
| 7 | g13703.t5 | ProSitePatterns | PS00027 | ‘Homeobox’ domain signature. | 5 | 28 | - |
| 10 | g13703.t5 | ProSiteProfiles | PS50071 | ‘Homeobox’ domain profile. | 1 | 30 | 12.163 |
| 4 | g13703.t5 | SUPERFAMILY | SSF46689 | Homeodomain-like | 2 | 33 | 1.03E-9 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003677 | DNA binding | MF |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | MF |
| GO:0006355 | regulation of transcription, DNA-templated | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed