Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Disks large 1 tumor suppressor protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13718 g13718.t7 TSS g13718.t7 32011239 32011239
chr_1 g13718 g13718.t7 isoform g13718.t7 32011597 32016868
chr_1 g13718 g13718.t7 exon g13718.t7.exon1 32011597 32012057
chr_1 g13718 g13718.t7 exon g13718.t7.exon2 32012943 32013211
chr_1 g13718 g13718.t7 cds g13718.t7.CDS1 32013125 32013211
chr_1 g13718 g13718.t7 exon g13718.t7.exon3 32016441 32016464
chr_1 g13718 g13718.t7 cds g13718.t7.CDS2 32016441 32016464
chr_1 g13718 g13718.t7 exon g13718.t7.exon4 32016531 32016592
chr_1 g13718 g13718.t7 cds g13718.t7.CDS3 32016531 32016592
chr_1 g13718 g13718.t7 exon g13718.t7.exon5 32016657 32016868
chr_1 g13718 g13718.t7 cds g13718.t7.CDS4 32016657 32016867
chr_1 g13718 g13718.t7 TTS g13718.t7 NA NA

Sequences

>g13718.t7 Gene=g13718 Length=1028
AAAATAGAGGAGGAGGTGGAATAAGAAAGACAATTTTTTTACGTTCAAGATACTTTGAAT
TCCACTCTAACAAAACAGGTACCTCACAAAAAAACTGTTTAATTTCCGCTCGACGTGAAT
GTGCTAATGAATATTGAATTAGCATTCCAATGTAATGAGTTATTTAAATAAAGATTGTTG
TGGAACATAGAGAGAAGCTTCTTCTTGATAAATAGACAATTGTTGCAATATATGAAGAAA
ATATTATTATGTGATCCACACCTTGACTATTACATATTTGTGGTTGCTCGAGTAAAGTAA
ATTTGTTATCAGTGTACATATAGGAAAAGAGTTGGATAACTTGATACCTGAATATTTTAT
GATTATGTGAGAACTTACGACGAAGATATGTCAATGTACATAATACAATATTCTTATCAG
CAACAAGTGTTACAGTGAATTCTCTCAATTTAATTCTACAGGCACAATACCATAAAATGT
TATATAAATAAAAAGAAAAGTGTGAAAATTTTTGTTGAAAAAAATTGAACTTGACATTTA
CATTAAAGAACGAATCAAAAAATAATTAATCAAATTGATTGGATTTTATCTCTATTAACA
ACTATAACTTTGATACTAAGCTAATAATATATAATAAAAAAGTATGACGACACGAAAGAA
GAATAAAAATCAACAGAAGGAGACTGGTGGATTTATAAAAAAGGTTTCATCATTATTTAA
TTTAGATACGGCATCAGCAGGAACGGATGCAAAAGTCAATGGAGATGATCAATGGGTGCA
TGAGGAAATCGCTTTATCACGAGGCTCAAGTGGACTCGGATTCAGTATAGCAGGAGGCAC
TGATAATCCACACATCGGGACTGATACATCAATTTATATCACAAAAATAATTCCCGGTGG
AGCCGCATATTCAGACGGTCGTATTCAAGTAAATGACATTATTGTATCAGTCAATGATGT
ATCAGTTGTTGATGTTACGCATGCACTTGCTGTTGAAGCGCTTAAAAGTGCTGGTGATAG
AGTCAAAT

>g13718.t7 Gene=g13718 Length=128
MTTRKKNKNQQKETGGFIKKVSSLFNLDTASAGTDAKVNGDDQWVHEEIALSRGSSGLGF
SIAGGTDNPHIGTDTSIYITKIIPGGAAYSDGRIQVNDIIVSVNDVSVVDVTHALAVEAL
KSAGDRVK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g13718.t7 CDD cd00992 PDZ_signaling 48 128 0.000
6 g13718.t7 Gene3D G3DSA:2.30.42.10 - 36 128 0.000
2 g13718.t7 PANTHER PTHR23119 DISCS LARGE 22 128 0.000
3 g13718.t7 PANTHER PTHR23119:SF51 DISKS LARGE 1 TUMOR SUPPRESSOR PROTEIN 22 128 0.000
1 g13718.t7 Pfam PF00595 PDZ domain 49 127 0.000
7 g13718.t7 ProSiteProfiles PS50106 PDZ domain profile. 48 128 21.471
5 g13718.t7 SMART SM00228 pdz_new 56 128 0.000
4 g13718.t7 SUPERFAMILY SSF50156 PDZ domain-like 40 127 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values