Gene loci information

Transcript annotation

  • This transcript has been annotated as Disks large 1 tumor suppressor protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13718 g13718.t8 TSS g13718.t8 32012596 32012596
chr_1 g13718 g13718.t8 isoform g13718.t8 32012938 32019114
chr_1 g13718 g13718.t8 exon g13718.t8.exon1 32012938 32013223
chr_1 g13718 g13718.t8 cds g13718.t8.CDS1 32013125 32013223
chr_1 g13718 g13718.t8 exon g13718.t8.exon2 32016531 32016592
chr_1 g13718 g13718.t8 cds g13718.t8.CDS2 32016531 32016592
chr_1 g13718 g13718.t8 exon g13718.t8.exon3 32016657 32016870
chr_1 g13718 g13718.t8 cds g13718.t8.CDS3 32016657 32016870
chr_1 g13718 g13718.t8 exon g13718.t8.exon4 32016937 32017011
chr_1 g13718 g13718.t8 cds g13718.t8.CDS4 32016937 32017011
chr_1 g13718 g13718.t8 exon g13718.t8.exon5 32017078 32017526
chr_1 g13718 g13718.t8 cds g13718.t8.CDS5 32017078 32017526
chr_1 g13718 g13718.t8 exon g13718.t8.exon6 32017759 32017839
chr_1 g13718 g13718.t8 cds g13718.t8.CDS6 32017759 32017822
chr_1 g13718 g13718.t8 exon g13718.t8.exon7 32018198 32018752
chr_1 g13718 g13718.t8 exon g13718.t8.exon8 32019009 32019114
chr_1 g13718 g13718.t8 TTS g13718.t8 NA NA

Sequences

>g13718.t8 Gene=g13718 Length=1828
AAAAGGCACAATACCATAAAATGTTATATAAATAAAAAGAAAAGTGTGAAAATTTTTGTT
GAAAAAAATTGAACTTGACATTTACATTAAAGAACGAATCAAAAAATAATTAATCAAATT
GATTGGATTTTATCTCTATTAACAACTATAACTTTGATACTAAGCTAATAATATATAATA
AAAAAGTATGACGACACGAAAGAAGAATAAAAATCAACAGAAGGAGACTGGTGGATTTAT
AAAAAAGGTTTCATCATTATTTAATTTAGATACGGTAATATTGTTTGTCAATGGAGATGA
TCAATGGGTGCATGAGGAAATCGCTTTATCACGAGGCTCAAGTGGACTCGGATTCAGTAT
AGCAGGAGGCACTGATAATCCACACATCGGGACTGATACATCAATTTATATCACAAAAAT
AATTCCCGGTGGAGCCGCATATTCAGACGGTCGTATTCAAGTAAATGACATTATTGTATC
AGTCAATGATGTATCAGTTGTTGATGTTACGCATGCACTTGCTGTTGAAGCGCTTAAAAG
TGCTGGTGATAGAGTCAAATTGAATGTTAAAAGAAAACGTCCACCAGCCGTTCCACAAAC
TGCTGAAATCGATCTCGTAAAGGGTGACAAAACATTGGGTTTTAGTATAGCAGGAGGCAT
AGGAAATCAACATATTCCAGGTGATAATGGAATTTATGTTACAAAAATAATGGATGGTGG
AGCAGCAGCAGTTGATGGTCGACTAAGTATTGGCGACAAATTGCTCAATGTTAAAACAAA
GACGATGAACAAAAATTTAGAGAATGTTTCACACGAAGATGCTGTTGCAACGCTTAAAGC
AATTACTGATCGTGTGGTTTTAACAGTACAGAAAGCTCAACATGTTGTTCATAGCACATC
ATACCTTAATCAAAACAATTCACAATCAATGAATGCAATGAATAATATTAGTACCACAGG
TTTAGACCTTAATGATAGCGGAAGAACTCATTCACCTCTGCCCGTCTTGGAAAATTCATC
ATCGCGACATGCATCTACAAATGTTTTGGCAACGCCGCGTGCCGTCAGTCATGAAGATAT
CACAAGAGAACCGCGAACTATAGTGATTCATAAAGGCAAGACGGCATCAAAAGCTTTAGG
CGTAAGTTAAAAATTTAATATAAAATAGGAATTTATGTATCATTTATACTGGCTGGTGGT
CCTGCTGATCTTAGTGGTGACTTGAAACGTGGCGATCAATTGCTATCGGTTAATGGTATT
AATTTGCGAAATGCAACGCATGAAGAAGCAGCGGCTGCACTTAAAAATTCTGGTGATACA
GTTACACTCGTGGCTCAATATCGACCCGAAGACTATAATCGATTTGAGGCACGAATTCAT
GAATTAAAGCAGCAAGCGGCAGCAGCTGTACAATCTGGCACAGGAACACTCTTGCGTACA
TCACAAAAACGTTCACTCTATGTGAGAGCTTTGTTCGACTATGATCCAAATCGAGATGAC
GGATTACCAACACGTGGTCTGCCATTTAAGCATGGCGATATTTTACATGTAACGAATGCA
TCCGATGATGAGTGGTGGCAAGCGAGACGCGTCATTGGAGATGGTGAAGAAGATAATATG
GGTATTGTGCCATCAAAAAGACGCTGGGAGAGAAAACAAAGAGCGAGGGATCGTAGTGTT
AAATTTCAAGGATACCAAGCACCCGCAAATGTTGCAGAAAAGACGTCAACATTGGACCGA
AAAAAGAAAAATTTCTCATTTAGTCGAAGATTCCCGTTCATGAAGAGTCGTGAAGATGGC
AAGAACGAGGATGGATCAGATCAAGAAC

>g13718.t8 Gene=g13718 Length=320
MTTRKKNKNQQKETGGFIKKVSSLFNLDTVILFVNGDDQWVHEEIALSRGSSGLGFSIAG
GTDNPHIGTDTSIYITKIIPGGAAYSDGRIQVNDIIVSVNDVSVVDVTHALAVEALKSAG
DRVKLNVKRKRPPAVPQTAEIDLVKGDKTLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAA
AVDGRLSIGDKLLNVKTKTMNKNLENVSHEDAVATLKAITDRVVLTVQKAQHVVHSTSYL
NQNNSQSMNAMNNISTTGLDLNDSGRTHSPLPVLENSSSRHASTNVLATPRAVSHEDITR
EPRTIVIHKGKTASKALGVS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g13718.t8 CDD cd00992 PDZ_signaling 44 128 2.06599E-11
9 g13718.t8 CDD cd00992 PDZ_signaling 140 228 4.49473E-15
7 g13718.t8 Gene3D G3DSA:2.30.42.10 - 33 135 2.3E-32
8 g13718.t8 Gene3D G3DSA:2.30.42.10 - 136 240 1.1E-27
13 g13718.t8 MobiDBLite mobidb-lite consensus disorder prediction 275 290 -
14 g13718.t8 MobiDBLite mobidb-lite consensus disorder prediction 275 295 -
3 g13718.t8 PANTHER PTHR23119 DISCS LARGE 9 314 9.0E-89
4 g13718.t8 PANTHER PTHR23119:SF51 DISKS LARGE 1 TUMOR SUPPRESSOR PROTEIN 9 314 9.0E-89
1 g13718.t8 Pfam PF00595 PDZ domain 45 127 7.6E-22
2 g13718.t8 Pfam PF00595 PDZ domain 141 228 1.4E-16
16 g13718.t8 ProSiteProfiles PS50106 PDZ domain profile. 44 131 22.898
15 g13718.t8 ProSiteProfiles PS50106 PDZ domain profile. 140 231 21.129
12 g13718.t8 SMART SM00228 pdz_new 52 131 1.8E-23
11 g13718.t8 SMART SM00228 pdz_new 148 231 2.3E-15
5 g13718.t8 SUPERFAMILY SSF50156 PDZ domain-like 33 132 6.18E-28
6 g13718.t8 SUPERFAMILY SSF50156 PDZ domain-like 135 232 3.29E-21

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values