General information for g13723.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Actin, muscle.
Parent gene
- The parent gene g13723 is located on chr_1: 32068086..32069646 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13723 | g13723.t1 | TSS | g13723.t1 | 32068015 | 32068015 |
| chr_1 | g13723 | g13723.t1 | isoform | g13723.t1 | 32068040 | 32069168 |
| chr_1 | g13723 | g13723.t1 | exon | g13723.t1.exon1 | 32068040 | 32068205 |
| chr_1 | g13723 | g13723.t1 | cds | g13723.t1.CDS1 | 32068040 | 32068205 |
| chr_1 | g13723 | g13723.t1 | exon | g13723.t1.exon2 | 32068337 | 32068436 |
| chr_1 | g13723 | g13723.t1 | cds | g13723.t1.CDS2 | 32068337 | 32068436 |
| chr_1 | g13723 | g13723.t1 | exon | g13723.t1.exon3 | 32068508 | 32069168 |
| chr_1 | g13723 | g13723.t1 | cds | g13723.t1.CDS3 | 32068508 | 32069168 |
| chr_1 | g13723 | g13723.t1 | TTS | g13723.t1 | 32069665 | 32069665 |
Sequences
>g13723.t1 Gene=g13723 Length=927
ATGTGTGATGATGATGTTGCTGCATTGGTCGTTGACAATGGCTCAGGAATGTGCAAAGCT
GGCTTCGCTGGTGATGACGCTCCACGTGCTGTCTTCCCATCAATCGTAGGTCGCCCACGT
CATCAAGGTGTTATGGTCGGTATGGGTCAAAAGGACTCATATGTTGAAGAGCACCCAGTC
TTGCTCACAGAAGCTCCATTGAACCCAAAGGCTAACCGCGAGAAGATGACACAAATCATG
TTTGAAACATTCAACTCACCAGCTATGAGATGTGTCTCACACACAGTCCCAATTTATGAA
GGTTATGCTTTGCCACATGCCATCCTCCGTCTTGACTTGGCCGGTCGCGACTTGACTGAC
TACTTGATGAAGATCTTGACCGAACGCGGTTACTCATTCGTCACAACAGCTGAACGTGAA
ATCGTTCGTGACATCAAGGAAAAGTTGTGCTATGTTGCATTGGACTTCGAACAAGAAATG
GCCACCGCTGCTGCCTCAACCTCACTCGAGAAGTCATATGAATTGCCTGATGGTCAAGTT
ATCACCATCGGTAACGAACGTTTCCGTTGCCCAGAATCATTGTTCCAACCATCATTCTTG
GGTATGGAATCATGCGGTATTCACGAAACCGTCTACAATTCAATCATGAAGTGCGATGTT
GATATCCGTAAGGACTTGTACGCCAACAACGTCTTATCAGGTGGCACAACAATGTACCCA
GGTATTGCCGATCGTATGCAAAAGGAAATGACTGCCCTCGCTCCATCAACAATCAAGATC
AAGATCATTGCTCCACCAGAACGTAAATACTCAGTCTGGATCGGAGGTTCAATCTTGGCA
TCACTCTCAACCTTCCAGCAGATGTGGATCTCAAAGGAAGAATACGACGAATCAGGCCCA
GGCATTGTTCACCGCAAGTGCTTCTAA
>g13723.t1 Gene=g13723 Length=308
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVEEHPV
LLTEAPLNPKANREKMTQIMFETFNSPAMRCVSHTVPIYEGYALPHAILRLDLAGRDLTD
YLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQV
ITIGNERFRCPESLFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANNVLSGGTTMYP
GIADRMQKEMTALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGP
GIVHRKCF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 24 | g13723.t1 | CDD | cd00012 | NBD_sugar-kinase_HSP70_actin | 9 | 96 | 1.2474E-5 |
| 20 | g13723.t1 | Gene3D | G3DSA:3.30.420.40 | - | 3 | 56 | 9.9E-21 |
| 21 | g13723.t1 | Gene3D | G3DSA:3.30.420.40 | - | 57 | 93 | 4.3E-14 |
| 23 | g13723.t1 | Gene3D | G3DSA:3.30.420.40 | - | 94 | 249 | 9.0E-69 |
| 19 | g13723.t1 | Gene3D | G3DSA:3.90.640.10 | Actin; Chain A | 115 | 201 | 9.0E-69 |
| 22 | g13723.t1 | Gene3D | G3DSA:3.30.420.40 | - | 250 | 306 | 1.3E-15 |
| 6 | g13723.t1 | PANTHER | PTHR11937:SF162 | ACTIN, INDIRECT FLIGHT MUSCLE-LIKE PROTEIN | 1 | 56 | 2.5E-189 |
| 9 | g13723.t1 | PANTHER | PTHR11937:SF397 | ACTIN, INDIRECT FLIGHT MUSCLE-RELATED | 1 | 56 | 2.5E-189 |
| 13 | g13723.t1 | PANTHER | PTHR11937 | ACTIN | 1 | 56 | 2.5E-189 |
| 5 | g13723.t1 | PANTHER | PTHR11937:SF162 | ACTIN, INDIRECT FLIGHT MUSCLE-LIKE PROTEIN | 56 | 90 | 2.5E-189 |
| 8 | g13723.t1 | PANTHER | PTHR11937:SF397 | ACTIN, INDIRECT FLIGHT MUSCLE-RELATED | 56 | 90 | 2.5E-189 |
| 12 | g13723.t1 | PANTHER | PTHR11937 | ACTIN | 56 | 90 | 2.5E-189 |
| 4 | g13723.t1 | PANTHER | PTHR11937:SF162 | ACTIN, INDIRECT FLIGHT MUSCLE-LIKE PROTEIN | 91 | 307 | 2.5E-189 |
| 11 | g13723.t1 | PANTHER | PTHR11937 | ACTIN | 91 | 307 | 2.5E-189 |
| 7 | g13723.t1 | PANTHER | PTHR11937:SF397 | ACTIN, INDIRECT FLIGHT MUSCLE-RELATED | 92 | 307 | 2.5E-189 |
| 10 | g13723.t1 | PANTHER | PTHR11937 | ACTIN | 92 | 307 | 2.5E-189 |
| 2 | g13723.t1 | Pfam | PF00022 | Actin | 4 | 45 | 3.5E-12 |
| 3 | g13723.t1 | Pfam | PF00022 | Actin | 55 | 91 | 4.8E-9 |
| 1 | g13723.t1 | Pfam | PF00022 | Actin | 92 | 308 | 8.0E-81 |
| 18 | g13723.t1 | ProSitePatterns | PS01132 | Actins and actin-related proteins signature. | 61 | 73 | - |
| 17 | g13723.t1 | ProSitePatterns | PS00432 | Actins signature 2. | 289 | 297 | - |
| 16 | g13723.t1 | SMART | SM00268 | actin_3 | 6 | 308 | 1.2E-147 |
| 15 | g13723.t1 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 4 | 94 | 6.29E-31 |
| 14 | g13723.t1 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 92 | 308 | 2.04E-91 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
