General information for g13723.t14
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Actin, indirect flight muscle.
Parent gene
- The parent gene g13723 is located on chr_1: 32068086..32069646 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13723 | g13723.t14 | isoform | g13723.t14 | 32067408 | 32069646 |
| chr_1 | g13723 | g13723.t14 | exon | g13723.t14.exon1 | 32067408 | 32067468 |
| chr_1 | g13723 | g13723.t14 | TSS | g13723.t14 | 32067418 | 32067418 |
| chr_1 | g13723 | g13723.t14 | exon | g13723.t14.exon2 | 32068016 | 32068962 |
| chr_1 | g13723 | g13723.t14 | cds | g13723.t14.CDS1 | 32068608 | 32068962 |
| chr_1 | g13723 | g13723.t14 | exon | g13723.t14.exon3 | 32069137 | 32069646 |
| chr_1 | g13723 | g13723.t14 | cds | g13723.t14.CDS2 | 32069137 | 32069168 |
| chr_1 | g13723 | g13723.t14 | TTS | g13723.t14 | 32069665 | 32069665 |
Sequences
>g13723.t14 Gene=g13723 Length=1518
AAAAGTCGTTTAGTTAAAGTGTACAGATCGTTTCTGGTGGCTTCAGTTTCTTGTAGTGAA
GAAAAAAACTTAAACTCCATTCAAAATGTGTGATGATGATGTTGCTGCATTGGTCGTTGA
CAATGGCTCAGGAATGTGCAAAGCTGGCTTCGCTGGTGATGACGCTCCACGTGCTGTCTT
CCCATCAATCGTAGGTCGCCCACGTCATCAAGGTGTTATGGTCGGTATGGGTCAAAAGGA
CTCATATGTTGGTGATGAGGCCCAAAGCAAAGAGGTATCCTTACCTTGAAATACCCAATT
GAGCACGGTATCATCACAAACTGGGATGATATGGAGAAGATCTGGCATCACACTTTCTAC
AATGAACTTCGCGTTGCCCCAGAAGAGCACCCAGTCTTGCTCACAGAAGCTCCATTGAAC
CCAAAGGCTAACCGCGAGAAGATGACACAAATCATGTTTGAAACATTCAACTCACCAGCT
ATGTATGTTGCCATCCAAGCCGTTCTCTCATTGTACGCCTCAGGTCGTACCACCGGTATT
GTTTTGGATTCAGGAGATGTGTCTCACACACAGTCCCAATTTATGAAGGTTATGCTTTGC
CACATGCCATCCTCCGTCTTGACTTGGCCGGTCGCGACTTGACTGACTACTTGATGAAGA
TCTTGACCGAACGCGGTTACTCATTCGTCACAACAGCTGAACGTGAAATCGTTCGTGACA
TCAAGGAAAAGTTGTGCTATGTTGCATTGGACTTCGAACAAGAAATGGCCACCGCTGCTG
CCTCAACCTCACTCGAGAAGTCATATGAATTGCCTGATGGTCAAGTTATCACCATCGGTA
ACGAACGTTTCCGTTGCCCAGAATCATTGTTCCAACCATCATTCTTGGGTATGGAATCAT
GCGGTATTCACGAAACCGTCTACAATTCAATCATGAAGTGCGATGTTGATATCCGTAAGG
ACTTGTACGCCAACAACGTCTTATCAGGTGGCACAACAATGTACCCAGGCCCAGGCATTG
TTCACCGCAAGTGCTTCTAAATCAATCAATCACACCAAAAATACAACCAATCAACAACAA
TTTTACTTTCTACATTTTTTCTATTATAATGATAAATTAATAAAAAAATATTTTAACATC
AACATCAAAAAAAAAACAACAAACAACCGTCTGCACACCCCAAAAACAACAACATCAATA
TATCACAATACACCGCCATCAGTTTTTGTGAAAAAAAGTTTTTTTTCTTTCTTTCTATAT
TAATTTCTTTAAATTTTAAAGTCCTTTCAATTATCATTCATTTCTAAATTATGTTTTTTT
GATTAAAATATTTCTCTTTTAATTATAAAAACTGTATTATGAATTTATTTGGTATATTGA
AATGGACGATAGAAAAGAAAATGAGAAAAAATTTGCATTCATTTTTACTTATCGTTAAGG
AGACTGTTTATAATTTTTTTTCGTTTATTGAGAAAATGAATTAAAATGATAAGATTCTAT
TTGCGAAAATATTACAAA
>g13723.t14 Gene=g13723 Length=128
MKILTERGYSFVTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVIT
IGNERFRCPESLFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANNVLSGGTTMYPGP
GIVHRKCF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g13723.t14 | Gene3D | G3DSA:3.90.640.10 | Actin; Chain A | 1 | 80 | 0 |
| 6 | g13723.t14 | Gene3D | G3DSA:3.30.420.40 | - | 81 | 119 | 0 |
| 2 | g13723.t14 | PANTHER | PTHR11937:SF397 | ACTIN, INDIRECT FLIGHT MUSCLE-RELATED | 1 | 119 | 0 |
| 3 | g13723.t14 | PANTHER | PTHR11937 | ACTIN | 1 | 119 | 0 |
| 1 | g13723.t14 | Pfam | PF00022 | Actin | 6 | 119 | 0 |
| 4 | g13723.t14 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 1 | 119 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
