General information for g13728.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g13728 is located on chr_1: 32092918..32095357 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13728 | g13728.t3 | isoform | g13728.t3 | 32092918 | 32095357 |
| chr_1 | g13728 | g13728.t3 | exon | g13728.t3.exon1 | 32092918 | 32093267 |
| chr_1 | g13728 | g13728.t3 | cds | g13728.t3.CDS1 | 32092944 | 32093267 |
| chr_1 | g13728 | g13728.t3 | exon | g13728.t3.exon2 | 32094501 | 32095357 |
| chr_1 | g13728 | g13728.t3 | cds | g13728.t3.CDS2 | 32094501 | 32094563 |
| chr_1 | g13728 | g13728.t3 | TSS | g13728.t3 | NA | NA |
| chr_1 | g13728 | g13728.t3 | TTS | g13728.t3 | NA | NA |
Sequences
>g13728.t3 Gene=g13728 Length=1207
ATTCTCAAAGTGATTCCTCGAAATCGATGAGATTAGAACGGCAACCAAATAATTTAATTG
ATTCTTTTGCTCAAACTGAAACTCATACAGACACAGTAATGACAAATGTTGATATTGCAA
CTACATCGAGTGATATGGTTGATTCAGGTGTAGGCTCTCAACATAAATCATCGACATGTA
AAGAACGTAATAATTCATCAATAATAGATGAAGATGAAGACATATCGTTTGCTGATGATC
GTAATCGATATAAAAGTGTTAGCGAAGAAGATACAGAAGAAGCAGTTGGTGCAGAATCCT
CAGATATTTGTGCAATAGTAGTTGAAGATGAAGAGAAAAAAGAAGAAGAGCCGAAATATT
CAGGAATTGCGTTATTTTCAATACTTCAGCCACTTTTTTCGCCGCAATTCTAAAGAGCTT
CTTGTAAACATTTTAATGAGACAAAAAATTATTATTTTTCTTTAGTTTGCACACAAAATT
TTCTATGTAGAATGAAAGAAAAAAGAATATTCTTATTGATTAAGTAAATGGAGTGAATAT
ATGAATACAAAAAAGAAACTAATATCAATATACATAAAATATTAGAAAGCGAGAGCGCAA
AAATGAAGCTTTTTTATGATAATGCATGAAGAGCATTTTTTTCTAAATTTAAATATGAAT
AAAGGTAAAAGCTTTACATATGTCACAGCTGTTTTTTGGTTATTTAAAATAAAAAATAAC
GAAAAAAATGGAATAGTTATGATCAACGGACAGATGAATGATTTATTGTTTAATTGAATG
TTTGTGTGCCTAAAAACATCGAAAAAAATAATTATAATTAATACTTATTACGGAAAGTTT
TACATAAAGAAAACAAAAAAAGTGTAATGGAATTTTCCAAATTTGACTATTGTTCTCCTT
GTTTTAGGCATGTATATTGTAAATAAAAAAAAGTTAAGTTGATGCCTGTAAATAAATTTA
ATTAACTCTTTTTATCAAATACACATTGTATTGTAAATATTTAAAACTTGTTAGATGAAT
GAGAATATAATGATGAATGCAACAAAATGTAAAATGCAAAAACATGATGATAAAAAGCTA
AATTGACTTTAATAAAAAGTGAATAAAAAATTTAAATTGACAATATTTTATTTTATTTAG
AACACATTTTTTATTGTTTCAGTTTGATGCTTTTTCAATATTTACAGATCTCAAATATTG
ACATTAT
>g13728.t3 Gene=g13728 Length=128
MRLERQPNNLIDSFAQTETHTDTVMTNVDIATTSSDMVDSGVGSQHKSSTCKERNNSSII
DEDEDISFADDRNRYKSVSEEDTEEAVGAESSDICAIVVEDEEKKEEEPKYSGIALFSIL
QPLFSPQF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g13728.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 57 | - |
| g13728.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 55 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
