General information for g13733.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Proton-coupled amino acid transporter 4.
Parent gene
- The parent gene g13733 is located on chr_1: 32133614..32135385 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13733 | g13733.t1 | isoform | g13733.t1 | 32133614 | 32135385 |
| chr_1 | g13733 | g13733.t1 | exon | g13733.t1.exon1 | 32133614 | 32133620 |
| chr_1 | g13733 | g13733.t1 | cds | g13733.t1.CDS1 | 32133614 | 32133620 |
| chr_1 | g13733 | g13733.t1 | exon | g13733.t1.exon2 | 32133688 | 32134023 |
| chr_1 | g13733 | g13733.t1 | cds | g13733.t1.CDS2 | 32133688 | 32134023 |
| chr_1 | g13733 | g13733.t1 | exon | g13733.t1.exon3 | 32134079 | 32134465 |
| chr_1 | g13733 | g13733.t1 | cds | g13733.t1.CDS3 | 32134079 | 32134465 |
| chr_1 | g13733 | g13733.t1 | exon | g13733.t1.exon4 | 32134527 | 32134878 |
| chr_1 | g13733 | g13733.t1 | cds | g13733.t1.CDS4 | 32134527 | 32134878 |
| chr_1 | g13733 | g13733.t1 | exon | g13733.t1.exon5 | 32134941 | 32135385 |
| chr_1 | g13733 | g13733.t1 | cds | g13733.t1.CDS5 | 32134941 | 32135385 |
| chr_1 | g13733 | g13733.t1 | TSS | g13733.t1 | NA | NA |
| chr_1 | g13733 | g13733.t1 | TTS | g13733.t1 | NA | NA |
Sequences
>g13733.t1 Gene=g13733 Length=1527
ATGGAGTATGACAAAAATATTGAGAACAAAATTCTCACGGAAAATCTGCTGCCGAAGGGT
GAACAGAACAACAATATTGATATGGAACTCAATGGCAGTAGTAATGTGATTGTAAATGAA
AATTATAGACGATCAGCGGATAAAGATTTTGATCAATTACATCCTGCTGTAGTTAAATTG
AAAGCAGCAGCAGAAAATGGAAGTAGTGTAAAAAATAGAAATACTGAACCAAATAACAAT
GAAAGACCACATCCAAAAACTACATATTTGGAAACTTTGATGCACTTGTTCAAAGGCAAT
GTGGGACCAGGTTGTTTAGCTATGGCAGATGCTGTTAAAAATGGCGGATTAATTTTGGCG
CCAATTTTGACACTCTTTCTCGGTATTGTTTGTGTTCATGTCCAGCATATTTTATTGCAG
TGTTCCAAAGAAATGCAAATTAAATATGATCTCGCAGAAAGCCCAGATTATGCAGAGACA
GTAGAACTTGTCTTTGCAAGCAGTGACAATCAAAAGTGTACAAAATATGCTAAAACAATG
AAAGCTATTTGTAATGCATTTATTTGTATCACACAATTAGGCTTTTGTTGCATTTACTTT
CTTTTCATTGGAACGAATTTAAAGCAAGTTTTAGATTTTTATGGTTTGCGTATTCCCTTT
GGTTTGCTCGTAGCTATAATTTTAATTCCGATATGGCTCAGCTCTCTTATCAGAAATTTA
AAATATTTAGCTCCATGTTCAGGAATTGCAAATGTTTGTATGATTACAGGTCTTGTGATC
TCATATTACTACTCATTACAAGATTTGCCTCCAATCACTGAAAGAAACTTTATGCCTCAC
GACATAAGAACTCTTCCTTTATTTTTTGGAACAGTAATCTTCGCATTTGAGGGAATAGCT
CTTGTTTTGCCGCTTCAAAATGCAATGAAAAAACCACAGAATTTTTCAAAATGTTTTGGC
GTCCTAAATGTTGGCATGGTAATTGTCAGTGGAATTTTCGTCTCTTTCGGTACTATCGGC
TATTTAAAATACGGTGAAGACACTAAAGCTTCATTGACATTAAATTTACCAACAGATGAA
ATACTTGCACAATCTGTCAAACTAGCAATAGCTTTAGGAGTTTTACTGGGCTATGCAATT
CAATTTTTTGTCGCAATGCAAATTATGTTTCCTAATATCAGACAAAATTTTAAATTCTCT
GATCGTAATCCAATCATCAGTGAATTGATTTTTCGAACACTTATGGTTTTAATTACTTTT
ACTATAGCTGTGCTGATACCTGAACTTGATCTTCTACTCAGTCTTATTGGTAGTGTTTGT
TCAACTGTTTTAGCTCTTGTTTTGCCGCCACTAATGGAATTAATTATCACATCTTCTTGC
GAGAATAACAATAGAAGTAAATTTGTGATTATAAAAAATTTCATAATTTTATTAATCTCA
TTGCTTGGATTTTTAACTGGTGGTTTTGAAGCTTTGTCAGCTATTTTGCAAAAAATGTTT
AGTAATGAAATTTTTGAAACTACTTAA
>g13733.t1 Gene=g13733 Length=508
MEYDKNIENKILTENLLPKGEQNNNIDMELNGSSNVIVNENYRRSADKDFDQLHPAVVKL
KAAAENGSSVKNRNTEPNNNERPHPKTTYLETLMHLFKGNVGPGCLAMADAVKNGGLILA
PILTLFLGIVCVHVQHILLQCSKEMQIKYDLAESPDYAETVELVFASSDNQKCTKYAKTM
KAICNAFICITQLGFCCIYFLFIGTNLKQVLDFYGLRIPFGLLVAIILIPIWLSSLIRNL
KYLAPCSGIANVCMITGLVISYYYSLQDLPPITERNFMPHDIRTLPLFFGTVIFAFEGIA
LVLPLQNAMKKPQNFSKCFGVLNVGMVIVSGIFVSFGTIGYLKYGEDTKASLTLNLPTDE
ILAQSVKLAIALGVLLGYAIQFFVAMQIMFPNIRQNFKFSDRNPIISELIFRTLMVLITF
TIAVLIPELDLLLSLIGSVCSTVLALVLPPLMELIITSSCENNNRSKFVIIKNFIILLIS
LLGFLTGGFEALSAILQKMFSNEIFETT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 15 | g13733.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 84 | - |
| 14 | g13733.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 67 | 84 | - |
| 2 | g13733.t1 | PANTHER | PTHR22950 | AMINO ACID TRANSPORTER | 73 | 497 | 2.1E-128 |
| 3 | g13733.t1 | PANTHER | PTHR22950:SF150 | FI17861P1 | 73 | 497 | 2.1E-128 |
| 1 | g13733.t1 | Pfam | PF01490 | Transmembrane amino acid transporter protein | 86 | 487 | 1.2E-75 |
| 26 | g13733.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 117 | - |
| 29 | g13733.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 118 | 139 | - |
| 20 | g13733.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 140 | 181 | - |
| 28 | g13733.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 182 | 202 | - |
| 25 | g13733.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 203 | 213 | - |
| 31 | g13733.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 214 | 233 | - |
| 19 | g13733.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 234 | 241 | - |
| 35 | g13733.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 242 | 264 | - |
| 21 | g13733.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 265 | 283 | - |
| 34 | g13733.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 284 | 306 | - |
| 18 | g13733.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 307 | 317 | - |
| 30 | g13733.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 318 | 341 | - |
| 24 | g13733.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 342 | 360 | - |
| 33 | g13733.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 361 | 384 | - |
| 17 | g13733.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 385 | 404 | - |
| 36 | g13733.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 405 | 426 | - |
| 23 | g13733.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 427 | 431 | - |
| 27 | g13733.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 432 | 456 | - |
| 16 | g13733.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 457 | 467 | - |
| 32 | g13733.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 468 | 489 | - |
| 22 | g13733.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 490 | 508 | - |
| 4 | g13733.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 117 | 139 | - |
| 11 | g13733.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 182 | 204 | - |
| 9 | g13733.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 214 | 236 | - |
| 7 | g13733.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 243 | 265 | - |
| 10 | g13733.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 285 | 307 | - |
| 13 | g13733.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 320 | 342 | - |
| 8 | g13733.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 362 | 384 | - |
| 6 | g13733.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 405 | 427 | - |
| 5 | g13733.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 432 | 454 | - |
| 12 | g13733.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 474 | 496 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K14209 (solute carrier family 36 (proton-coupled amino acid transporter))
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
