General information for g13734.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Proton-coupled amino acid transporter-like protein CG1139.
Parent gene
- The parent gene g13734 is located on chr_1: 32137287..32138630 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13734 | g13734.t1 | TSS | g13734.t1 | 32135812 | 32135812 |
| chr_1 | g13734 | g13734.t1 | isoform | g13734.t1 | 32135835 | 32137287 |
| chr_1 | g13734 | g13734.t1 | exon | g13734.t1.exon1 | 32135835 | 32135984 |
| chr_1 | g13734 | g13734.t1 | cds | g13734.t1.CDS1 | 32135835 | 32135984 |
| chr_1 | g13734 | g13734.t1 | exon | g13734.t1.exon2 | 32136054 | 32136453 |
| chr_1 | g13734 | g13734.t1 | cds | g13734.t1.CDS2 | 32136054 | 32136453 |
| chr_1 | g13734 | g13734.t1 | exon | g13734.t1.exon3 | 32136518 | 32137287 |
| chr_1 | g13734 | g13734.t1 | cds | g13734.t1.CDS3 | 32136518 | 32137287 |
| chr_1 | g13734 | g13734.t1 | TTS | g13734.t1 | 32137313 | 32137313 |
Sequences
>g13734.t1 Gene=g13734 Length=1320
ATGAAGGAAGAAAATGAAAAAAAGATTGATATACCGACAAAAATCGAATATGAACCTGGA
GAAAAATCTGCAAAGAAGCATCCAACTTCATATATTGAGACACTTATTCATTTCGTTAAA
GCTGGAATTGGGGCTGGGATATTCTCAATGGCACAAGCAATGTCTTTAGTTGGTTATATT
AATGGAATAATTCTTACAATTTTCCTCTCATTTGTGTGTCTTTATGAGCAGCATGTATTG
CTAAAATGTGCTAGTAATGTTAGAAAACATTATGGAATAGAAGGAAGACCCGATTATGGA
GAAACTTTTCAATTAGCTTTACTAGCAAATGATAAGTGGAAAAAACATGCACGAAAAATG
AAAATTATCAGTAATGTCTTCCTTATCCTTACGCAACTTGGATTTTGTGCCGTTTATTTT
GTATTTATCGGAAATACGCTTAAAAACGTTATGGAATTTTTTGGATATTCTTTTGAAGTT
CGAATACTTATTTTATTTTCACTAGTACCTATTTGGTTATCAGCATTGATCACTAATCTC
AAGTTTTTAGCACCTTGTTCATTACTTGCAAGTGTTTGCATGATTACTGGTATTTCAATC
ACATTTTACTACATTTCACAAGATTTACCACCAATAAGTGAAAGAAGCATGGCTACGTTT
TCATTAACAGGTCTTGCATTATTCTTTGGTACAGTGATCTATTTATTCGAAGGTATAGGA
TTAGTTTTACCTTTACAAGCAGAAATGAAAGAACCAAAGAATTTTCCTCGTCCTTTCGGC
GTTTTAAATGTTGGAGTTATTATTCTCACCACTTTAGTTATAAGTTTTGGTTTTATGGGC
TATTGGCAATTTGGTAATGAAGTTGCAGGTTCTTTGATTTTAAACTTGCCACCTGATGAA
GTTTTCTATCAAAGTGTTTTAGTAATTGTCGCATGTGGTGTAGCACTAGGTTATGCTATT
CAATTTTACATTCCGATACAAATTCTTTTTCCACTGATAAGACGATCGATCAAGTTAGCT
GACAATAATCCACTGATAAGTGAATTGCTTTTTAGAACAATAATGGTTATACTTACCTTT
TTGGTTGCAATATTAGTGCCAAACATTGGCCTTCTCATCAGTTTGATCGGTGCTGTATGC
TCAAATTCACTTGCATTAGTATTTCCCGTGATAATCGAATATCTTGTCAAAACAAGAGGT
GAAGATAAAATGAAGCCAATACATATAGTGAAAAATATTTTTATTCTACTACTTGCTGTC
ATTGGCTTCTTAAGTGGAGGTTTCGAAGCAATTCGAGGAATAATTGCATTATATACTTGA
>g13734.t1 Gene=g13734 Length=439
MKEENEKKIDIPTKIEYEPGEKSAKKHPTSYIETLIHFVKAGIGAGIFSMAQAMSLVGYI
NGIILTIFLSFVCLYEQHVLLKCASNVRKHYGIEGRPDYGETFQLALLANDKWKKHARKM
KIISNVFLILTQLGFCAVYFVFIGNTLKNVMEFFGYSFEVRILILFSLVPIWLSALITNL
KFLAPCSLLASVCMITGISITFYYISQDLPPISERSMATFSLTGLALFFGTVIYLFEGIG
LVLPLQAEMKEPKNFPRPFGVLNVGVIILTTLVISFGFMGYWQFGNEVAGSLILNLPPDE
VFYQSVLVIVACGVALGYAIQFYIPIQILFPLIRRSIKLADNNPLISELLFRTIMVILTF
LVAILVPNIGLLISLIGAVCSNSLALVFPVIIEYLVKTRGEDKMKPIHIVKNIFILLLAV
IGFLSGGFEAIRGIIALYT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g13734.t1 | PANTHER | PTHR22950 | AMINO ACID TRANSPORTER | 21 | 435 | 1.6E-107 |
| 3 | g13734.t1 | PANTHER | PTHR22950:SF150 | FI17861P1 | 21 | 435 | 1.6E-107 |
| 1 | g13734.t1 | Pfam | PF01490 | Transmembrane amino acid transporter protein | 28 | 424 | 9.3E-71 |
| 15 | g13734.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 30 | - |
| 31 | g13734.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 31 | 50 | - |
| 24 | g13734.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 51 | 55 | - |
| 29 | g13734.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 56 | 75 | - |
| 18 | g13734.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 76 | 121 | - |
| 37 | g13734.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 122 | 142 | - |
| 22 | g13734.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 143 | 153 | - |
| 28 | g13734.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 154 | 175 | - |
| 16 | g13734.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 176 | 181 | - |
| 36 | g13734.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 182 | 205 | - |
| 21 | g13734.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 206 | 224 | - |
| 35 | g13734.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 225 | 247 | - |
| 20 | g13734.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 248 | 258 | - |
| 33 | g13734.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 259 | 282 | - |
| 26 | g13734.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 283 | 301 | - |
| 30 | g13734.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 302 | 324 | - |
| 19 | g13734.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 325 | 344 | - |
| 27 | g13734.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 345 | 366 | - |
| 23 | g13734.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 367 | 371 | - |
| 32 | g13734.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 372 | 392 | - |
| 17 | g13734.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 393 | 412 | - |
| 34 | g13734.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 413 | 438 | - |
| 25 | g13734.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 439 | 439 | - |
| 10 | g13734.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 35 | 54 | - |
| 7 | g13734.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 59 | 81 | - |
| 6 | g13734.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 122 | 144 | - |
| 14 | g13734.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 154 | 176 | - |
| 5 | g13734.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 183 | 205 | - |
| 11 | g13734.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 225 | 247 | - |
| 13 | g13734.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 259 | 281 | - |
| 12 | g13734.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 301 | 323 | - |
| 9 | g13734.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 344 | 366 | - |
| 8 | g13734.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 370 | 392 | - |
| 4 | g13734.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 413 | 435 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K14209 (solute carrier family 36 (proton-coupled amino acid transporter))
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
