General information for g13768.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12.
Parent gene
- The parent gene g13768 is located on chr_1: 32318164..32320093 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13768 | g13768.t4 | isoform | g13768.t4 | 32317992 | 32320093 |
| chr_1 | g13768 | g13768.t4 | exon | g13768.t4.exon1 | 32317992 | 32318087 |
| chr_1 | g13768 | g13768.t4 | TSS | g13768.t4 | 32318018 | 32318018 |
| chr_1 | g13768 | g13768.t4 | exon | g13768.t4.exon2 | 32318150 | 32318767 |
| chr_1 | g13768 | g13768.t4 | cds | g13768.t4.CDS1 | 32318164 | 32318616 |
| chr_1 | g13768 | g13768.t4 | exon | g13768.t4.exon3 | 32320047 | 32320093 |
| chr_1 | g13768 | g13768.t4 | TTS | g13768.t4 | NA | NA |
Sequences
>g13768.t4 Gene=g13768 Length=761
AAGCAAAGTTTTCGTACAATATTTTTCAGTCTGTTAGTGAAAAAATCTAATCGCAGTCGG
CATAAATTTATTTTCATTCATAAATTTTTGAAACGGTCTTAGTAGTCAATATGAGCAAAT
TAATCAAAAATGCAGTAAATTTTTTTGGAGTTCAACAACTATTACGATTAGGAGCGGATG
TTAAGCAGAATGGTGGCATTATAAAATCAATAAAGAAATTATATCGTATGGACAGCATTA
AAGCCGGACGTCTTGTTGGTCAAGATAAGTACGGAAATAAGTATTATGAGAATCCTCATT
TTTTCTTTGGAAGAAATCGTTGGGTTGAATATGCAGAATACAAGAATCTTGAATATGACG
CTACACAAGTGCCAGCTGAATGGTTTGGATGGTTGCATTATCGAACTGATGCACCACCTT
ATGCTGATATCGCAAAATTGCAAACTAAAAAATACAAATGGATGATGGATCATAGTGAAA
ATGCAACTGGTACAAAAGACGCTTACTTCCCTTACTCTACAGTCAACGCAAAATTTACAG
CATGGGATCCAAAAAAGAAATAAATTATTATATTTTTCCTGTTATTGTATTTATTTGTAT
TTTCATTTAAAATAAAGTCAGACAATAGAATAAAGAAGTGGCACCAATGTCGTCATAAAT
CAGCCGTCTTTTCAACGCCTAGCACATGTTTTTATCACGTTCTCTCCACAGGCATGATAT
TTTATTAATTAATATGAAGAAGAAATGTAATTATTTTTACT
>g13768.t4 Gene=g13768 Length=150
MSKLIKNAVNFFGVQQLLRLGADVKQNGGIIKSIKKLYRMDSIKAGRLVGQDKYGNKYYE
NPHFFFGRNRWVEYAEYKNLEYDATQVPAEWFGWLHYRTDAPPYADIAKLQTKKYKWMMD
HSENATGTKDAYFPYSTVNAKFTAWDPKKK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g13768.t4 | PANTHER | PTHR12910:SF2 | NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT 12 | 19 | 149 | 0 |
| 3 | g13768.t4 | PANTHER | PTHR12910 | NADH-UBIQUINONE OXIDOREDUCTASE SUBUNIT B17.2 | 19 | 149 | 0 |
| 1 | g13768.t4 | Pfam | PF05071 | NADH ubiquinone oxidoreductase subunit NDUFA12 | 46 | 147 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0032981 | mitochondrial respiratory chain complex I assembly | BP |
| GO:0016020 | membrane | CC |
KEGG
Orthology
- This transcript has been annotated with K18160 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 2)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
