Gene loci information

Transcript annotation

  • This transcript has been annotated as Apoptosis-inducing factor 3.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13779 g13779.t1 TTS g13779.t1 32368995 32368995
chr_1 g13779 g13779.t1 isoform g13779.t1 32369096 32370896
chr_1 g13779 g13779.t1 exon g13779.t1.exon1 32369096 32369976
chr_1 g13779 g13779.t1 cds g13779.t1.CDS1 32369096 32369976
chr_1 g13779 g13779.t1 exon g13779.t1.exon2 32370039 32370544
chr_1 g13779 g13779.t1 cds g13779.t1.CDS2 32370039 32370544
chr_1 g13779 g13779.t1 exon g13779.t1.exon3 32370605 32370806
chr_1 g13779 g13779.t1 cds g13779.t1.CDS3 32370605 32370806
chr_1 g13779 g13779.t1 exon g13779.t1.exon4 32370881 32370896
chr_1 g13779 g13779.t1 cds g13779.t1.CDS4 32370881 32370896
chr_1 g13779 g13779.t1 TSS g13779.t1 32370956 32370956

Sequences

>g13779.t1 Gene=g13779 Length=1605
ATGTTTAAGCTACATGGTTCAGATGAATTTATTGAAGGAGTCGTTTGCCAAGAGAACGAA
ATTGGCGAGAATGAGATGAAAAATTTTGATCTCGGTGAATCAAAGGTGTTAATTGTAAAG
CAAAATGGTAAAATTTCGGCCTTGGGAACAAAATGCAGTCACTACGGCGCTCCACTTGCA
ACCGGTGCTTTAGGCGATGGAAGAATTCGTTGTCCATGGCATGGTGCTTGCTTTAACATA
ACTAGTGGTGACATTGAGGACTTTCCAGGTCAAGATTCAATTCCCTGCTATCAAGTAAAA
ATCGAAAAAGGTCAAGTCAAGGTTCGTGCAAGAAAATCTGAACTGCAAACGAACAAACGA
GTTCATAATTTTGCAAAGCGTGACAAAAATGACAGTAGAACATTTGTTATTGTGGGCGGT
GGACCAAGTGGTGCTATTTGTGCTGAAACTCTTCGTGCTAAAGGCTTTACAGGTCGCATT
GTGATGATTTCAAATGAAACAACACTGCCTTATGATCGTATCAAGTGTAGTAAAGTTATG
GATGCCAAAATCGAAAGTCTTCACTTGAGAACTCAACAATTTTATGATGATAATGAAATT
GAAGTTATGACTGGTACAGCTGCAACATCATTAAACACACAAAATAAAGAAATTTCAATT
GATAATGGCTATAAAATTAAATATGACAAAATTTATTTGGCTACTGGATCATCTGCTAGA
AAAATTACAATTCCTGGCTCAGACTTGAAAAACATTTTTGTTCTTCGCAATATCAATGAT
GCACATGAAATTAATGCACAATTGAATGATCAAACTCATGTAGTTGTACTTGGTGTAAGT
TTTATCGGAATGGAAGCTGCAGCATATTGTGTGAAAAAAGCCGCAAAAGTGACTGTAATT
GGTCGCGACCAATTTCCGCTTCGAGCATTTGGCAATGAAATTGGTGAAACCATTATGAAA
TTTTTTGAGGAACAAAATGTTCATTTTATTATGAGAAGTGGAATTAAAGAATGTGTTGGT
GATGGCACAATTGATTCTGTGATTCTCAATGATGGAACAAAATTGAAAGCAGACATTCTC
ATCACTGGTGTAGGTTCAACACTTAATACAGAATTTTTGAAAGATAGTGGTATTGCAATA
AATAAAAATGGATCGATTGATACAAATGATTACCTTGAAAGCAATATTCCTGATGTCTAT
GTTGGTGGTGATATTGCAAATAGCCCAATTTTCATGACAAATCATCGTGAGACAATCGGT
CATTATGGTTTAGCTCAATATCATGGTAAAGTTGCAGCCAGCAATATGTGTGGTGTCCAG
AAAAAGCTTAAAGCTGTACCATTCTTCTGGATGATGGTTTTTGGCAAATCATTCCGTTAT
GCAGGTCATGGAAGATATTCTGAAGTGAAGATCGATGGAAGTCTGGAAGATTTAAAATTC
ATCGCTTATTATATCGACGCTGATGGTAAAGTTGTTGCAATTTGTACTTGTGGTCGTGAT
CCAATTGCTTCACAATTTGCTGAATTCTTAGCTAATGGAAAAATATTAACAAAAGCTCAA
CTTGAAACTGATCCTTTAGGATGGACAAAAACTGTAAATGCTTAA

>g13779.t1 Gene=g13779 Length=534
MFKLHGSDEFIEGVVCQENEIGENEMKNFDLGESKVLIVKQNGKISALGTKCSHYGAPLA
TGALGDGRIRCPWHGACFNITSGDIEDFPGQDSIPCYQVKIEKGQVKVRARKSELQTNKR
VHNFAKRDKNDSRTFVIVGGGPSGAICAETLRAKGFTGRIVMISNETTLPYDRIKCSKVM
DAKIESLHLRTQQFYDDNEIEVMTGTAATSLNTQNKEISIDNGYKIKYDKIYLATGSSAR
KITIPGSDLKNIFVLRNINDAHEINAQLNDQTHVVVLGVSFIGMEAAAYCVKKAAKVTVI
GRDQFPLRAFGNEIGETIMKFFEEQNVHFIMRSGIKECVGDGTIDSVILNDGTKLKADIL
ITGVGSTLNTEFLKDSGIAINKNGSIDTNDYLESNIPDVYVGGDIANSPIFMTNHRETIG
HYGLAQYHGKVAASNMCGVQKKLKAVPFFWMMVFGKSFRYAGHGRYSEVKIDGSLEDLKF
IAYYIDADGKVVAICTCGRDPIASQFAEFLANGKILTKAQLETDPLGWTKTVNA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
22 g13779.t1 CDD cd03478 Rieske_AIFL_N 14 106 0.000
20 g13779.t1 Gene3D G3DSA:2.102.10.10 - 12 121 0.000
18 g13779.t1 Gene3D G3DSA:3.50.50.60 - 136 437 0.000
19 g13779.t1 Gene3D G3DSA:3.50.50.60 - 241 364 0.000
3 g13779.t1 PANTHER PTHR43557 APOPTOSIS-INDUCING FACTOR 1 13 530 0.000
4 g13779.t1 PANTHER PTHR43557:SF7 APOPTOSIS-INDUCING FACTOR MITOCHONDRIA-ASSOCIATED 4 13 530 0.000
11 g13779.t1 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 134 156 0.000
8 g13779.t1 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 135 154 0.000
9 g13779.t1 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 228 246 0.000
7 g13779.t1 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 273 291 0.000
12 g13779.t1 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 273 298 0.000
6 g13779.t1 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 357 373 0.000
13 g13779.t1 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 358 372 0.000
5 g13779.t1 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 384 406 0.000
10 g13779.t1 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 399 406 0.000
1 g13779.t1 Pfam PF00355 Rieske [2Fe-2S] domain 14 97 0.000
2 g13779.t1 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 135 414 0.000
21 g13779.t1 ProSiteProfiles PS51296 Rieske [2Fe-2S] iron-sulfur domain profile. 13 108 25.499
14 g13779.t1 SUPERFAMILY SSF50022 ISP domain 14 108 0.000
16 g13779.t1 SUPERFAMILY SSF51905 FAD/NAD(P)-binding domain 133 318 0.000
17 g13779.t1 SUPERFAMILY SSF51905 FAD/NAD(P)-binding domain 273 441 0.000
15 g13779.t1 SUPERFAMILY SSF55424 FAD/NAD-linked reductases, dimerisation (C-terminal) domain 442 530 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0051537 2 iron, 2 sulfur cluster binding MF
GO:0050660 flavin adenine dinucleotide binding MF
GO:0055114 NA NA
GO:0016491 oxidoreductase activity MF

KEGG

Orthology

Pathway

This gene does not belong to any pathways.

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values