General information for g13779.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Apoptosis-inducing factor 3.
Parent gene
- The parent gene g13779 is located on chr_1: 32370726..32379142 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13779 | g13779.t2 | TTS | g13779.t2 | 32368995 | 32368995 |
| chr_1 | g13779 | g13779.t2 | isoform | g13779.t2 | 32369096 | 32369575 |
| chr_1 | g13779 | g13779.t2 | exon | g13779.t2.exon1 | 32369096 | 32369575 |
| chr_1 | g13779 | g13779.t2 | cds | g13779.t2.CDS1 | 32369096 | 32369467 |
| chr_1 | g13779 | g13779.t2 | TSS | g13779.t2 | NA | NA |
Sequences
>g13779.t2 Gene=g13779 Length=480
AGTGGTATTGCAATAAATAAAAATGGATCGATTGATACAAATGATTACCTTGAAAGCAAT
ATTCCTGATGTCTATGTTGGTGGTGATATTGCAAATAGCCCAATTTTCATGACAAATCAT
CGTGAGACAATCGGTCATTATGGTTTAGCTCAATATCATGGTAAAGTTGCAGCCAGCAAT
ATGTGTGGTGTCCAGAAAAAGCTTAAAGCTGTACCATTCTTCTGGATGATGGTTTTTGGC
AAATCATTCCGTTATGCAGGTCATGGAAGATATTCTGAAGTGAAGATCGATGGAAGTCTG
GAAGATTTAAAATTCATCGCTTATTATATCGACGCTGATGGTAAAGTTGTTGCAATTTGT
ACTTGTGGTCGTGATCCAATTGCTTCACAATTTGCTGAATTCTTAGCTAATGGAAAAATA
TTAACAAAAGCTCAACTTGAAACTGATCCTTTAGGATGGACAAAAACTGTAAATGCTTAA
>g13779.t2 Gene=g13779 Length=123
MTNHRETIGHYGLAQYHGKVAASNMCGVQKKLKAVPFFWMMVFGKSFRYAGHGRYSEVKI
DGSLEDLKFIAYYIDADGKVVAICTCGRDPIASQFAEFLANGKILTKAQLETDPLGWTKT
VNA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g13779.t2 | PANTHER | PTHR43557 | APOPTOSIS-INDUCING FACTOR 1 | 2 | 119 | 0 |
| g13779.t2 | PANTHER | PTHR43557:SF7 | APOPTOSIS-INDUCING FACTOR MITOCHONDRIA-ASSOCIATED 4 | 2 | 119 | 0 |
| g13779.t2 | SUPERFAMILY | SSF55424 | FAD/NAD-linked reductases, dimerisation (C-terminal) domain | 31 | 119 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0050660 | flavin adenine dinucleotide binding | MF |
| GO:0055114 | NA | NA |
| GO:0016491 | oxidoreductase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
