General information for g13782.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Mitochondrial inner membrane protease subunit 1.
Parent gene
- The parent gene g13782 is located on chr_1: 32379504..32379959 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13782 | g13782.t4 | TSS | g13782.t4 | 32378516 | 32378516 |
| chr_1 | g13782 | g13782.t4 | isoform | g13782.t4 | 32378544 | 32379142 |
| chr_1 | g13782 | g13782.t4 | exon | g13782.t4.exon1 | 32378544 | 32379033 |
| chr_1 | g13782 | g13782.t4 | cds | g13782.t4.CDS1 | 32378719 | 32379033 |
| chr_1 | g13782 | g13782.t4 | exon | g13782.t4.exon2 | 32379099 | 32379142 |
| chr_1 | g13782 | g13782.t4 | cds | g13782.t4.CDS2 | 32379099 | 32379140 |
| chr_1 | g13782 | g13782.t4 | TTS | g13782.t4 | 32379263 | 32379263 |
Sequences
>g13782.t4 Gene=g13782 Length=534
ATGTCATTAATCTCAAAAATCGCAGCAAAAGCAACGACTGCGATTGGTATAGGATGCACT
ATTCACGTTTTCTTCGAATATGTAGCTGACTTTGTTGTGTGTTCTGGTAAATTTCTTGTT
TATTTTCTGAAAATTTGAAAATAAATTTCATTTTGTGTGATTTTTAGGTGAAAGTATGCA
GCCAACACTTTCATCAAATAATATTCTGCTTTGTAACAAAATTGCACAACGACTCAATAA
AATTAACCGCAATGATATTATTATCGCTGTTCACCCTACATCACCAAAATCTTTGATCTG
TAAAAGAGTTATTGCAATGGAAGGAGATATGATTTTAACAACCGATACAAGTGATGAGGC
TATTGGCAAAAATGAGACTAAGACAATCATTATAAAACGTGGAAGTTGTTGGATTGAAGG
TGATAATCGAAAAAACAGTACTGATAGTAGAAATTACGGACAAATTCCTGTTGGTCTCAT
TAAGAGCAAGGTGATAGCAAAAATATGGCCTTTGAATGAATTTAGAATTTTTTA
>g13782.t4 Gene=g13782 Length=119
MQPTLSSNNILLCNKIAQRLNKINRNDIIIAVHPTSPKSLICKRVIAMEGDMILTTDTSD
EAIGKNETKTIIIKRGSCWIEGDNRKNSTDSRNYGQIPVGLIKSKVIAKIWPLNEFRIF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g13782.t4 | CDD | cd06530 | S26_SPase_I | 1 | 106 | 0.0e+00 |
| 7 | g13782.t4 | Gene3D | G3DSA:2.10.109.10 | Umud Fragment | 1 | 118 | 0.0e+00 |
| 3 | g13782.t4 | PANTHER | PTHR12383 | PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED | 1 | 117 | 0.0e+00 |
| 5 | g13782.t4 | PRINTS | PR00727 | Bacterial leader peptidase 1 (S26A) family signature | 41 | 53 | 1.0e-07 |
| 4 | g13782.t4 | PRINTS | PR00727 | Bacterial leader peptidase 1 (S26A) family signature | 73 | 92 | 1.0e-07 |
| 2 | g13782.t4 | Pfam | PF10502 | Signal peptidase, peptidase S26 | 1 | 57 | 0.0e+00 |
| 1 | g13782.t4 | Pfam | PF10502 | Signal peptidase, peptidase S26 | 67 | 111 | 3.8e-06 |
| 6 | g13782.t4 | SUPERFAMILY | SSF51306 | LexA/Signal peptidase | 1 | 119 | 0.0e+00 |
| 8 | g13782.t4 | TIGRFAM | TIGR02227 | sigpep_I_bact: signal peptidase I | 1 | 114 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0006508 | proteolysis | BP |
| GO:0008236 | serine-type peptidase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K09647 (mitochondrial inner membrane protease subunit 1 [EC:3.4.21.-])
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed