General information for g13798.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g13798 is located on chr_1: 32448449..32452910 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13798 | g13798.t3 | isoform | g13798.t3 | 32447960 | 32452910 |
| chr_1 | g13798 | g13798.t3 | exon | g13798.t3.exon1 | 32447960 | 32448579 |
| chr_1 | g13798 | g13798.t3 | TTS | g13798.t3 | 32447962 | 32447962 |
| chr_1 | g13798 | g13798.t3 | cds | g13798.t3.CDS1 | 32448449 | 32448579 |
| chr_1 | g13798 | g13798.t3 | exon | g13798.t3.exon2 | 32448653 | 32448778 |
| chr_1 | g13798 | g13798.t3 | cds | g13798.t3.CDS2 | 32448653 | 32448778 |
| chr_1 | g13798 | g13798.t3 | exon | g13798.t3.exon3 | 32448856 | 32449316 |
| chr_1 | g13798 | g13798.t3 | cds | g13798.t3.CDS3 | 32448856 | 32449316 |
| chr_1 | g13798 | g13798.t3 | exon | g13798.t3.exon4 | 32449449 | 32449512 |
| chr_1 | g13798 | g13798.t3 | cds | g13798.t3.CDS4 | 32449449 | 32449512 |
| chr_1 | g13798 | g13798.t3 | exon | g13798.t3.exon5 | 32449572 | 32449649 |
| chr_1 | g13798 | g13798.t3 | cds | g13798.t3.CDS5 | 32449572 | 32449644 |
| chr_1 | g13798 | g13798.t3 | exon | g13798.t3.exon6 | 32452574 | 32452910 |
| chr_1 | g13798 | g13798.t3 | TSS | g13798.t3 | 32453138 | 32453138 |
Sequences
>g13798.t3 Gene=g13798 Length=1686
ACAGAAGCTTTTTAGCTTCTCATCAAGTAACAACGTGCACAATAGTGAAAGAGATTTTTT
TTTGAATTATTTTTTATTGACGAATGAGATGCGATTGACGATAAGTCCGAGAGATTAAGC
TAAACTGTTGCAAAGTATTAAGTTCCTTATTTAGTCACATTGAAAGCCAGTCAATCGTGT
GAAGTGTGATAAAAGTGAGAGAGTGAAACAATTTATTCAAGGATTTTATATTCAAGACTT
ACTACTTACTGGATTTACATACAGTCTCTTACGCGAAAGAGCATAATTTAAAATTTATTG
CTCGAGATTATAATAAAATATAAAAAAGAAAAATCATTCAACATGAGAAAATTTCTTTTG
CTTGTGGCTCTACTTTTTATGCTTGAAAGTAGCTCGGGGCTGTCAATTGATCCAGAAGCA
TCTATGGATCTAGAGCAGTATATAAGAGATGATTTTACCATTTCAATGCGTCATATTCGC
CCAAGAAAGAAGGCTAAAATTTCCATTGAGGCACTTTTCATGATTGATTTTCCTGCTGCT
AAGAATAAATTCACTTTCTATCTTGATCGAAAATCTAAACGTGTCACAATTGACATAAAT
TCAAATGCTCAGATATTTTCAAAACATCTTGAAGCACCAACATTGAATGAAACGACAACA
ATTCGATCACTTGCATTCAGTTTCTCTGGCAATTCAATTCGACTTTTCCTTGACTGCAAA
GAAGTTTACAGTGATCAAATGGAATTTAATTTATCAAAACTTTATTTAAATATGGACGAG
CCTGATGTGAAATTGTTGCGTGAACGAAAATATCCACTCTATTTAGACAGAAATACAGAA
AGTGCTCTCATTCGTGCCAATTGTCAAAAGACATCAAAAGACAAGAAGGGAAATCGTAAA
TTGGTGAAGGACAATGAGAGCTTCAACGGTTATTATAATGATCAAGAGATGAATAGAAAA
CGTGGCAGACGCGATCACAATAGAAACAACAACAATCGTTACAGCCAAAATTTAAACAGT
CTTTCACGTAGAGGAGATATCTCTGTTATTCATGGCGACTGTGATGAAAACTTATTGCGT
GGCATGAATGACTTAATTGCATTGGTCAAGAAGCTTGAGAAGGATATTGCAAATCAACAC
GGTGACATTCGACGACTGAATTCACTAATTGAAAATTGTGCAGTATGTAATGTATAAAAA
TGATGAGATTATTCACATTTTTATACAATTTTGTAAATAAAATCTTGTTTTGGCATTATT
TTATTGATTCAATTTCGTCCAAATTTAAATTTTAGTTTTAACGAATTTTAAAAGTTTAAA
TTTAAAAAGTCCGTTATATTGTACTTAATTTTTTGTTTTAAATATTTTCCATATAAGACA
GTCAGAAATAATATTTGTCATCAACCAAATTATAAAAATCACCAATATTGACCTTTGATT
GATTTATAAAGAAAATTTATAGACATGAATGTTCATAAATCACCATGTTTGAAATTTACA
AAATATCACATACAGTATTGAGATAAAACCAATAAAAGCCTACATATTCCAACATATCAA
GTCACAACATAAATTGAATCAAATGTCACAATAGAAATCAATTAACTTGAGCAAATTCAA
TTAATTATAAAACACTTTAAAATGATAAAGAAAAGAAATAAAAAGAAGTTTATCAATAAA
ACACAA
>g13798.t3 Gene=g13798 Length=284
MRKFLLLVALLFMLESSSGLSIDPEASMDLEQYIRDDFTISMRHIRPRKKAKISIEALFM
IDFPAAKNKFTFYLDRKSKRVTIDINSNAQIFSKHLEAPTLNETTTIRSLAFSFSGNSIR
LFLDCKEVYSDQMEFNLSKLYLNMDEPDVKLLRERKYPLYLDRNTESALIRANCQKTSKD
KKGNRKLVKDNESFNGYYNDQEMNRKRGRRDHNRNNNNRYSQNLNSLSRRGDISVIHGDC
DENLLRGMNDLIALVKKLEKDIANQHGDIRRLNSLIENCAVCNV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g13798.t3 | CDD | cd16081 | TSPcc_insect | 241 | 282 | 3.6927E-10 |
| 4 | g13798.t3 | Coils | Coil | Coil | 255 | 275 | - |
| 3 | g13798.t3 | Gene3D | G3DSA:2.60.120.200 | - | 13 | 151 | 7.9E-7 |
| 12 | g13798.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 198 | 224 | - |
| 1 | g13798.t3 | Pfam | PF11598 | Cartilage oligomeric matrix protein | 239 | 282 | 6.2E-9 |
| 6 | g13798.t3 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 21 | - |
| 7 | g13798.t3 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 3 | - |
| 8 | g13798.t3 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 4 | 14 | - |
| 9 | g13798.t3 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 15 | 21 | - |
| 5 | g13798.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 22 | 284 | - |
| 2 | g13798.t3 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 19 | - |
| 11 | g13798.t3 | SignalP_GRAM_NEGATIVE | SignalP-noTM | SignalP-noTM | 1 | 21 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed