General information for g13798.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g13798 is located on chr_1: 32448449..32452910 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13798 | g13798.t4 | TTS | g13798.t4 | 32447962 | 32447962 |
| chr_1 | g13798 | g13798.t4 | isoform | g13798.t4 | 32448449 | 32450384 |
| chr_1 | g13798 | g13798.t4 | exon | g13798.t4.exon1 | 32448449 | 32448579 |
| chr_1 | g13798 | g13798.t4 | cds | g13798.t4.CDS1 | 32448449 | 32448579 |
| chr_1 | g13798 | g13798.t4 | exon | g13798.t4.exon2 | 32448653 | 32448778 |
| chr_1 | g13798 | g13798.t4 | cds | g13798.t4.CDS2 | 32448653 | 32448778 |
| chr_1 | g13798 | g13798.t4 | exon | g13798.t4.exon3 | 32448856 | 32449316 |
| chr_1 | g13798 | g13798.t4 | cds | g13798.t4.CDS3 | 32448856 | 32449316 |
| chr_1 | g13798 | g13798.t4 | exon | g13798.t4.exon4 | 32449449 | 32449512 |
| chr_1 | g13798 | g13798.t4 | cds | g13798.t4.CDS4 | 32449449 | 32449512 |
| chr_1 | g13798 | g13798.t4 | exon | g13798.t4.exon5 | 32449572 | 32449649 |
| chr_1 | g13798 | g13798.t4 | cds | g13798.t4.CDS5 | 32449572 | 32449649 |
| chr_1 | g13798 | g13798.t4 | exon | g13798.t4.exon6 | 32450013 | 32450256 |
| chr_1 | g13798 | g13798.t4 | cds | g13798.t4.CDS6 | 32450013 | 32450100 |
| chr_1 | g13798 | g13798.t4 | exon | g13798.t4.exon7 | 32450325 | 32450384 |
| chr_1 | g13798 | g13798.t4 | TSS | g13798.t4 | NA | NA |
Sequences
>g13798.t4 Gene=g13798 Length=1164
ATGTCGCGTGTTTCAAATTTTTCTTTTTTTCTTGTTGATAAAATAAAATATTTTTTAAAA
AATACATTAAAAGTGGGCAAGCCTGAAGTTCATGTTTGTGACTTACAAAAATGTTGAATA
ATTGAAATTTCAAAATAAAAACGCTGATGGCGACGCCTTTTATCGCCTAAACAAATTGCT
CATTAGATGAGATCATTAATAATTTTCTTCTCACCAATGGATTATGACATAATTTGTATG
TGTTTAAAATTAGAATTTGCCAAAAAAGAAATGGAATTCAATGTAATTTTGGTTAGATAT
TTGTTCAACATGAGAAAATTTCTTTTGCTTGTGGCTCTACTTTTTATGCTTGAAAGTAGC
TCGGGGCTGTCAATTGATCCAGAAGCATCTATGGATCTAGAGCAGTATATAAGAGATGAT
TTTACCATTTCAATGCGTCATATTCGCCCAAGAAAGAAGGCTAAAATTTCCATTGAGGCA
CTTTTCATGATTGATTTTCCTGCTGCTAAGAATAAATTCACTTTCTATCTTGATCGAAAA
TCTAAACGTGTCACAATTGACATAAATTCAAATGCTCAGATATTTTCAAAACATCTTGAA
GCACCAACATTGAATGAAACGACAACAATTCGATCACTTGCATTCAGTTTCTCTGGCAAT
TCAATTCGACTTTTCCTTGACTGCAAAGAAGTTTACAGTGATCAAATGGAATTTAATTTA
TCAAAACTTTATTTAAATATGGACGAGCCTGATGTGAAATTGTTGCGTGAACGAAAATAT
CCACTCTATTTAGACAGAAATACAGAAAGTGCTCTCATTCGTGCCAATTGTCAAAAGACA
TCAAAAGACAAGAAGGGAAATCGTAAATTGGTGAAGGACAATGAGAGCTTCAACGGTTAT
TATAATGATCAAGAGATGAATAGAAAACGTGGCAGACGCGATCACAATAGAAACAACAAC
AATCGTTACAGCCAAAATTTAAACAGTCTTTCACGTAGAGGAGATATCTCTGTTATTCAT
GGCGACTGTGATGAAAACTTATTGCGTGGCATGAATGACTTAATTGCATTGGTCAAGAAG
CTTGAGAAGGATATTGCAAATCAACACGGTGACATTCGACGACTGAATTCACTAATTGAA
AATTGTGCAGTATGTAATGTATAA
>g13798.t4 Gene=g13798 Length=315
MDYDIICMCLKLEFAKKEMEFNVILVRYLFNMRKFLLLVALLFMLESSSGLSIDPEASMD
LEQYIRDDFTISMRHIRPRKKAKISIEALFMIDFPAAKNKFTFYLDRKSKRVTIDINSNA
QIFSKHLEAPTLNETTTIRSLAFSFSGNSIRLFLDCKEVYSDQMEFNLSKLYLNMDEPDV
KLLRERKYPLYLDRNTESALIRANCQKTSKDKKGNRKLVKDNESFNGYYNDQEMNRKRGR
RDHNRNNNNRYSQNLNSLSRRGDISVIHGDCDENLLRGMNDLIALVKKLEKDIANQHGDI
RRLNSLIENCAVCNV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g13798.t4 | CDD | cd16081 | TSPcc_insect | 272 | 313 | 5.88597E-10 |
| 5 | g13798.t4 | Coils | Coil | Coil | 286 | 306 | - |
| 4 | g13798.t4 | Gene3D | G3DSA:2.60.120.200 | - | 44 | 182 | 9.9E-7 |
| 3 | g13798.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 229 | 255 | - |
| 1 | g13798.t4 | Pfam | PF11598 | Cartilage oligomeric matrix protein | 270 | 313 | 7.2E-9 |
| 7 | g13798.t4 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 52 | - |
| 8 | g13798.t4 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 34 | - |
| 9 | g13798.t4 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 35 | 45 | - |
| 10 | g13798.t4 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 46 | 52 | - |
| 6 | g13798.t4 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 53 | 315 | - |
| 2 | g13798.t4 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 21 | 43 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed