Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Gonadotropin-releasing hormone II receptor.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13799 g13799.t2 TSS g13799.t2 32455771 32455771
chr_1 g13799 g13799.t2 isoform g13799.t2 32455772 32469875
chr_1 g13799 g13799.t2 exon g13799.t2.exon1 32455772 32456138
chr_1 g13799 g13799.t2 exon g13799.t2.exon2 32463545 32463879
chr_1 g13799 g13799.t2 cds g13799.t2.CDS1 32463737 32463879
chr_1 g13799 g13799.t2 exon g13799.t2.exon3 32464307 32464430
chr_1 g13799 g13799.t2 cds g13799.t2.CDS2 32464307 32464430
chr_1 g13799 g13799.t2 exon g13799.t2.exon4 32467013 32467161
chr_1 g13799 g13799.t2 cds g13799.t2.CDS3 32467013 32467161
chr_1 g13799 g13799.t2 exon g13799.t2.exon5 32469181 32469280
chr_1 g13799 g13799.t2 cds g13799.t2.CDS4 32469181 32469280
chr_1 g13799 g13799.t2 exon g13799.t2.exon6 32469609 32469698
chr_1 g13799 g13799.t2 cds g13799.t2.CDS5 32469609 32469698
chr_1 g13799 g13799.t2 exon g13799.t2.exon7 32469758 32469875
chr_1 g13799 g13799.t2 cds g13799.t2.CDS6 32469758 32469874
chr_1 g13799 g13799.t2 TTS g13799.t2 NA NA

Sequences

>g13799.t2 Gene=g13799 Length=1283
AGTTATCAGTCGACATTTGAACGATTCGGATCAAAAAAAAAATAGTCCAGTAATAAGCTA
TAGTGAACAGCAATTAAATTTATAAATGAAAATTCAAGTCGTGTGCCAGAAAGTGGAAAA
AAAATATTTATTTAATGCTCATATGACAGTTTAGTGAAAATTCATAGCTAAAAAAAAGTT
GTGTCTGGGGGAAGTAGAAGAAAAAAAAACAAAATCACTGGATAAAACCAACAAATGAAA
ATTGTTTAAATAACTGCAAGACACAAGCTATTGCTGGTGTATAAAATAAAATATGTACAT
AATTTTTAGGAAGGAACAAGATCTTGACTGTGTATTTTTTTAAAAAAATTGAGGATAAAA
ATAGAAGTTTCAATTTTTGAGGAGTTTTTCTCACTTACTCGCTAAATAAAAAAAAAACTT
CGGAAAAAAATTTGTGATGAAAATTATGAAGTATCAACCGCAAGTCGCTTGAAGGAAAGG
AGGAGAAGTTAAATAAATAAATAAATAAATAAAAGTCATAGTGAAAGGACATTGCTTGTA
TATGATGTTTGATAGTAAAATGGATGAAGAAACAAATTCAAATGTCGTCACGACAATTTC
GTCAATTAGTTTAGATGGAAATGCTCAGCAAAATGTCAACACATCAATGACACCCGACAT
GGTTTTCAATGATGGTCACAAACTCTCAATTATTGTATACAGTATTTTAATGGTAATATC
AGCAATTGGAAACATCACTGTATTAACTATATTACTAAAAAGAAGATTGCGAAGTCCCTC
GAGACTCGATATTATGCTGACACATCTGGCTATAGCCGATTTAATGGTGACGTTCATTCT
CATGCCATTAGAAATTGGATGGGCGTACACTGTGCAGTGGCTTGCTGGTGACATCATGTG
TCGTACAATGATGTTCTTTCGTACATTTGGACTTTATTTGTCGTCTTTTGTGCTTGTCTG
CATATCAGTTGATAGATATTATGCAGTGTTGAAACCACTTAATATGAAAGAGCATAGGGG
AAAAATTATGATTATTTGTGCCTGGATTGTATCAGCAATATGCAGTGCTCCACAGGCCTA
TATATTCCATGAAGAAACTCATCCTAAAGTAAGAAATTATACACAATGTGTTACATTTAA
TGTTTTCAAGTCACCACAAGGAGAATTGATATACAATGCTGTTGCAATGATAATGATGTA
TGCAGCGCCTTTACTTATAATCACTTTCTCCTATGGATCAATTTACTATGAGATTTTTCA
AAAGAGTCGGATGAAGAATTCTG

>g13799.t2 Gene=g13799 Length=241
MDEETNSNVVTTISSISLDGNAQQNVNTSMTPDMVFNDGHKLSIIVYSILMVISAIGNIT
VLTILLKRRLRSPSRLDIMLTHLAIADLMVTFILMPLEIGWAYTVQWLAGDIMCRTMMFF
RTFGLYLSSFVLVCISVDRYYAVLKPLNMKEHRGKIMIICAWIVSAICSAPQAYIFHEET
HPKVRNYTQCVTFNVFKSPQGELIYNAVAMIMMYAAPLLIITFSYGSIYYEIFQKSRMKN
S

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g13799.t2 Gene3D G3DSA:1.20.1070.10 - 12 241 4.9E-51
2 g13799.t2 PANTHER PTHR24241:SF174 CARDIOACCELERATORY PEPTIDE RECEPTOR-LIKE PROTEIN 40 239 7.8E-69
3 g13799.t2 PANTHER PTHR24241 NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR 40 239 7.8E-69
5 g13799.t2 PRINTS PR00237 Rhodopsin-like GPCR superfamily signature 42 66 2.6E-26
8 g13799.t2 PRINTS PR00237 Rhodopsin-like GPCR superfamily signature 76 97 2.6E-26
7 g13799.t2 PRINTS PR00237 Rhodopsin-like GPCR superfamily signature 121 143 2.6E-26
6 g13799.t2 PRINTS PR00237 Rhodopsin-like GPCR superfamily signature 153 174 2.6E-26
4 g13799.t2 PRINTS PR00237 Rhodopsin-like GPCR superfamily signature 206 229 2.6E-26
1 g13799.t2 Pfam PF00001 7 transmembrane receptor (rhodopsin family) 57 240 2.1E-32
16 g13799.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 43 -
20 g13799.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 44 66 -
12 g13799.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 67 77 -
18 g13799.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 78 103 -
15 g13799.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 104 122 -
21 g13799.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 123 144 -
11 g13799.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 145 155 -
17 g13799.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 156 176 -
14 g13799.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 177 202 -
19 g13799.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 203 230 -
13 g13799.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 231 241 -
27 g13799.t2 ProSitePatterns PS00237 G-protein coupled receptors family 1 signature. 127 143 -
28 g13799.t2 ProSiteProfiles PS50262 G-protein coupled receptors family 1 profile. 57 241 29.018
9 g13799.t2 SUPERFAMILY SSF81321 Family A G protein-coupled receptor-like 37 238 1.28E-44
26 g13799.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 44 66 -
25 g13799.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 78 100 -
22 g13799.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 115 137 -
23 g13799.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 158 176 -
24 g13799.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 207 229 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0007186 G protein-coupled receptor signaling pathway BP
GO:0016021 integral component of membrane CC
GO:0004930 G protein-coupled receptor activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed