General information for g13806.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Non-specific lipid-transfer protein.
Parent gene
- The parent gene g13806 is located on chr_1: 32522151..32525089 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13806 | g13806.t1 | isoform | g13806.t1 | 32522151 | 32525089 |
| chr_1 | g13806 | g13806.t1 | exon | g13806.t1.exon1 | 32522151 | 32522256 |
| chr_1 | g13806 | g13806.t1 | cds | g13806.t1.CDS1 | 32522151 | 32522256 |
| chr_1 | g13806 | g13806.t1 | exon | g13806.t1.exon2 | 32522875 | 32522922 |
| chr_1 | g13806 | g13806.t1 | cds | g13806.t1.CDS2 | 32522875 | 32522922 |
| chr_1 | g13806 | g13806.t1 | exon | g13806.t1.exon3 | 32522975 | 32523116 |
| chr_1 | g13806 | g13806.t1 | cds | g13806.t1.CDS3 | 32522975 | 32523116 |
| chr_1 | g13806 | g13806.t1 | exon | g13806.t1.exon4 | 32524040 | 32524704 |
| chr_1 | g13806 | g13806.t1 | cds | g13806.t1.CDS4 | 32524040 | 32524704 |
| chr_1 | g13806 | g13806.t1 | exon | g13806.t1.exon5 | 32524845 | 32524967 |
| chr_1 | g13806 | g13806.t1 | cds | g13806.t1.CDS5 | 32524845 | 32524967 |
| chr_1 | g13806 | g13806.t1 | exon | g13806.t1.exon6 | 32525022 | 32525089 |
| chr_1 | g13806 | g13806.t1 | cds | g13806.t1.CDS6 | 32525022 | 32525089 |
| chr_1 | g13806 | g13806.t1 | TTS | g13806.t1 | 32525223 | 32525223 |
| chr_1 | g13806 | g13806.t1 | TSS | g13806.t1 | NA | NA |
Sequences
>g13806.t1 Gene=g13806 Length=1152
ATGGCGACTTTTACTAAATCGCTTATATCTCAGCAAATACTCAACCAATTGAAAAAATGT
ATACATCATTCAATCTTTCTTAAAATAGACTACAAAACAACATATAGTGAATCAACTTGT
GGACAACGTGCACTTTATCAACTGGGAATGACGGGAATTCCAATTTACAATACAAACAAT
AATGGCTGTACTGGTTCAGCAACAATGATATTAGCTAAACAATTAGTTGAATCAGGAAGT
GATTGTGTTATGGCTTTAGGTTTTGAGAAAATGGAAAGAGGGACTTTAGGAATGAAATAC
ACTGACAGAGTTCATCCAGTTGATTTGCTTTATAAACAAGTCGACAAAATTGATGGTTTC
ACTTCATCAGCACCATCCGCTCAACCTTTCGGCAATGCTGGCGAGGAGCACATGAGAAAA
TATGGCTCGAAACCTGAACACTTTGCTAAAATTGCTTACAAAAGTTACAAACATTCATTA
AACAATCCTTATGCACAGTTTCAACAAGAGTACACTTTAGATCAAATCAAAAATGCACCA
ATTGTTCATCGTGTTCTCACAAAACTTCAATGTTGCCCAACTTCTGATGGTTCAGCTTGT
GTAATTCTTGCTAATGAAGATTTTGTAAAGAAACACAAACTTGAAAATCAAGCAGTTGAA
ATTTTGGCAATGGAAATGAGCACAGATTTGGAATCGACATTTACGACAAATAGCAGTATG
GTTGTTGCAGGATATGATATGAGTAAAAATGCAGCAAGAAAAGCTTTTGGAAAAGTCAAC
TTTAAACCACAAGATGTTGATGTCGTCGAACTTCACGATTGTTTTTCTGCCAATGAAATG
ATTACTTATGAAGCTTTAGGATTATGTGAAGAAGGAAAAGGACATAAATTAGTTGAAAGA
GGTGACAATACTTACGGTGGAAAATACGTTATTAACCCTAGTGGTGGATTAATTTCTAAA
GGAAATCCTTTGGGAGCAACCGGAATAGCTCAATGTACTGAACTATGTTGGCAATTAAGA
GGAATTGCAGGAAAACGACAAGTTAAAGATGCAAAATTAGCTTTACAACATAACATTGGT
TTAGGCGGAGCATGTGTCGTTTCTCTCTATAAACTTGGTTTCCCTGAAAAATCTATTAAA
CACAAACTTTAA
>g13806.t1 Gene=g13806 Length=383
MATFTKSLISQQILNQLKKCIHHSIFLKIDYKTTYSESTCGQRALYQLGMTGIPIYNTNN
NGCTGSATMILAKQLVESGSDCVMALGFEKMERGTLGMKYTDRVHPVDLLYKQVDKIDGF
TSSAPSAQPFGNAGEEHMRKYGSKPEHFAKIAYKSYKHSLNNPYAQFQQEYTLDQIKNAP
IVHRVLTKLQCCPTSDGSACVILANEDFVKKHKLENQAVEILAMEMSTDLESTFTTNSSM
VVAGYDMSKNAARKAFGKVNFKPQDVDVVELHDCFSANEMITYEALGLCEEGKGHKLVER
GDNTYGGKYVINPSGGLISKGNPLGATGIAQCTELCWQLRGIAGKRQVKDAKLALQHNIG
LGGACVVSLYKLGFPEKSIKHKL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g13806.t1 | CDD | cd00829 | SCP-x_thiolase | 36 | 370 | 0e+00 |
| 6 | g13806.t1 | Gene3D | G3DSA:3.40.47.10 | - | 5 | 371 | 0e+00 |
| 3 | g13806.t1 | PANTHER | PTHR18919:SF83 | CARRIER PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_4G06380)-RELATED | 34 | 371 | 0e+00 |
| 4 | g13806.t1 | PANTHER | PTHR18919 | ACETYL-COA C-ACYLTRANSFERASE | 34 | 371 | 0e+00 |
| 7 | g13806.t1 | PIRSF | PIRSF000429 | Ac-CoA_Ac_transf | 17 | 372 | 0e+00 |
| 2 | g13806.t1 | Pfam | PF00108 | Thiolase, N-terminal domain | 36 | 206 | 5e-07 |
| 1 | g13806.t1 | Pfam | PF02803 | Thiolase, C-terminal domain | 250 | 345 | 0e+00 |
| 5 | g13806.t1 | SUPERFAMILY | SSF53901 | Thiolase-like | 35 | 371 | 0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016746 | acyltransferase activity | MF |
| GO:0016747 | acyltransferase activity, transferring groups other than amino-acyl groups | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
