General information for g13813.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g13813 is located on chr_1: 32548860..32550043 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13813 | g13813.t1 | TSS | g13813.t1 | 32545590 | 32545590 |
| chr_1 | g13813 | g13813.t1 | isoform | g13813.t1 | 32545612 | 32550043 |
| chr_1 | g13813 | g13813.t1 | exon | g13813.t1.exon1 | 32545612 | 32545936 |
| chr_1 | g13813 | g13813.t1 | cds | g13813.t1.CDS1 | 32545612 | 32545936 |
| chr_1 | g13813 | g13813.t1 | exon | g13813.t1.exon2 | 32545992 | 32546666 |
| chr_1 | g13813 | g13813.t1 | cds | g13813.t1.CDS2 | 32545992 | 32546666 |
| chr_1 | g13813 | g13813.t1 | exon | g13813.t1.exon3 | 32546729 | 32547394 |
| chr_1 | g13813 | g13813.t1 | cds | g13813.t1.CDS3 | 32546729 | 32547394 |
| chr_1 | g13813 | g13813.t1 | exon | g13813.t1.exon4 | 32547451 | 32548101 |
| chr_1 | g13813 | g13813.t1 | cds | g13813.t1.CDS4 | 32547451 | 32548101 |
| chr_1 | g13813 | g13813.t1 | exon | g13813.t1.exon5 | 32548152 | 32548805 |
| chr_1 | g13813 | g13813.t1 | cds | g13813.t1.CDS5 | 32548152 | 32548805 |
| chr_1 | g13813 | g13813.t1 | exon | g13813.t1.exon6 | 32548860 | 32550043 |
| chr_1 | g13813 | g13813.t1 | cds | g13813.t1.CDS6 | 32548860 | 32550043 |
| chr_1 | g13813 | g13813.t1 | TTS | g13813.t1 | NA | NA |
Sequences
>g13813.t1 Gene=g13813 Length=4155
ATGAAAGCACTGCTGCTGCTTTCAGTTGTAATAGTCTTAATCTTAAAGTGTCAAGGTCGT
GAGATAAGAACGCAATGTGCTTTCTTTAATCCATTGTTAAATAATTTTTGCAATTCTGCT
ACTGATAAGAAAGTTAATTTTGAAAATATTGTTCGATTTTCTGAAAAAGATGATAATATT
GAAAATTCTGATAAAAGATATAAAGAAGAATTATTGAACAATGAACCGTTTATCCAATGT
GCTTATCAATTTCTGACATCTTTCGATGTTTCATGTATTATGTCTATCTATAATCCACAA
GAAAATAATTTTGATAGGATTGAAGGAAATCTTCCACCTATTGCAACTTTTAATCAAGTA
ACTTATGTTTGGATAATTGGACAGCACACAGTTAATATACCAACCATTATCTGTCAGCAA
TTTCCTCAGCTCCTTTTTCTTGATATTACTTCAAGTCGTTTAAATACAATCAACGAAAAT
TCATTCACATTCTGTAATAATCTTCAATATATTTTCTTGGCTTCAAATGAGATTTTAACA
ATTCCTGATAATACTTTTGGAAATAATTTAAGAAATGTTTTTAGCATTTTATTGACATTT
AATCAATTGAAAACAATCAGCTCTCGATCATTTTCAAATGAAGTCTTGACATCTCTCAAC
TCTTTTGAAGCTGATTCAAATTTCATTGAGTCAATTGATCCTAATTGGTTTGATACAGCA
AATAACCTTACATATTTAAATTTGATTAATAACCTATGTGTAAATCAAAATTTTCTAAAT
GTCCATTTGAATCGAAGTGAAGTGAGAAGTAATTTAACAGAATGTTTTAATAATTATGGA
AATGTTGAAACCACTACCACAACATCAACAACGACAACCACGACTTCTTCACCAAATGAA
TCTTTTATTCGATGTAGTTATCAGTTGTGGGGAAATGAAGTTAGTTGTGAATTAACAATT
TACAATCCTTTTGGGAGAAATGATTTTACTGAAATTGAGGGAACATTACCACCAGGAACA
TCTTATAATCAAGTTACAATTGTAATAGCAAGTCATCAATTAACTAGCAATATTCCTGGC
ATTATTTGTCGTTTATTTCCTCAGTTATCTTTATTAAGAATTCAATCTTCTCAAGTTTAT
ATCGTTAATCAAGAATCTTTTGAAGCTTGTCAAAACGCGTTTGAAATTTACCTTCCAGGT
AATAATATAACGGAAATTGGCACAAATACTTTTGGAAATAATTTAAGAACTCTTGGAATC
ATTGATTTGGGATTTAATCACTTAAAAAAAATAAGTTTGTCTTCATTTGGTTCAGAATCA
ATTGCGACATTGATCACTGTTTATTTAGATTCAAATGTAATTGACGCTATAGATCCAAAT
TGGTTTGATTCTGCAATCAATCTTTTAAATCTTGATTTGAGTTTTAATTTATGTACAAGT
CAATACTTTGACAACATCAATCAGAATCGAGATCAAGTCAGAGGTGCATTGTTGACATGT
TTTGAGAATTATGAAGGAAATGAAATAACAACGATTAGTACGACATCGATTCAACCTGAC
CAAGATTTCATTAGATGTACATATGATTTTTTTGAGGAAAATGAATTGTTTTGTATATTA
AATATTCATAATCCTAATGGAAGGAATGATTTTAACGAAATTGAAGGAACACTTCCACCG
AATACAAACTTCAACCAAGTAAAATGGGTTTCGACAATTTTTCAATTAACAACCAACGTT
CCCAGCATTATTTGTTATCAATTTCCAGAACTCACAATTTTAGAACTTGTATCGTGTCAA
ATAACTACGATTGATCACCATTCTTTTGCTGGATGTAACAATATGAGACTTTTAAATATT
TTTTTGAACAACATTACACATATTCCTGATTCAACATTTGGAAGTAACTTGAGAAATTTT
GAAAGGATAGATATAAGTGAAAATCAATTACAAACATTAAGTTTTGAATCATTTTCCACT
GAATTTTTAAACTCTTTAGTAAGTTTTATGGCAGACTTAAATTTTATTAACGAAATTGAT
CCAAAATGGTTTGATTCATCTGTTGCGCTTCGTCAACTCAATTTAAATTCGAATTTATGT
GTGAATCAAAGTTTTGATCATTTTACACATACTCGGGAACAAGTGAGGGATGTTTTGATG
CCATGCTTTGAAAATTATGAAAACAGAGAAACAACGACAATTATGCCAGATGATACTTTT
ATACGATGCGACTATGGCTTTAGAGAAATGAATGAAACATTTTGTGTCTTGAGCATTTAC
AATCCTAATGGAAGGAATGATTTTAATAGAATTGAAGGAGATTTACCAAGTGGAATTTCT
TATAACCAAATTCGTTATGTGCAAGCTGTTAGCCAATGGACTTCAAATGTTCCGACTAGA
ATTTGTCAACAATTTCCACAACTTCAATCATTAGGAATTTGGGCATCAAATGTAACATTT
ATCAATTATGAATCATTTAAATTTTGTGATAATATTTTTGAAATTTTACTTGGCTTCAAT
GATATTTCATATATTCCTGCAAGAACTTTTGATAATAATATGTGGAATTTGCGAAATATT
AATTTTGGTTATAACAAATTAACTACATTAAGTTTGAATTCGTTTGGTCATAATATAGCA
TCATTAGTATGGGTTTATCTGCATTTTAACTCTATTAATGCTATTGAATCCAATTGGTTT
GATTCAACTCAAAATTTAACTCTTCTTGATTTCCGAAACAATTTTTGTGCCAATCAGATT
TTCTTTGATATTCATATCAATCGAAATCAAGTTAGAAATCAATTGATTAATTGTTTTGCT
AATTATGACTTACAACAAACAACAACACCACCAATTGCACCAGATGAAACATTTATTCGA
TGTAATTATACATTTTGGAGACCTGATGAAATACGATGTGAAATGACGATTTTTAATATT
AATGGAAATAATAATTTTGATAATATTGAAGGTACTCTACCGATAAATGGAACTTACGAT
CAAGTTCTTTTTGTCTATATGAATAGGCAATATACTACAAATGTTCCATCTATAATTTGC
AAACAATTTACTAGACTCATTCAACTAGAAATGTGGTATTCTCATGTAAATTTTTTAAAT
CATGAGTCATTTCAATTTTGCAACAATATCGATTTAATTTCTTTATCTGGAAATCACATA
ACAAGGATAGGTGATGGAACTTTTGGCAGCAGTTTAAGAAATCTTAAAACGATTCATTTT
TTTGATAATCAAATTACAAGATTAAACTTTAGATCATTTAGCAGAGAATCATTTGAACAA
TTAACAAGGATGCATTTTGATTCAAATTTTATCAATGCTATCGATCCAGAGTTATTTGAT
TCTGCTTCAAGTCTTTTTGTTCTTAATTTGCGTAACAATCTTTGTATAAGTGACAGCTTT
TTTGATGTTGGACAGAATAGAAGTGGTGTAAAAAATGCTTTGAAAAGATGTTTTGAAAAT
TATGAGTTTGATGAACCAGCAGATGGATCTTTTATTCGATGTAGATATATTACATTTGAC
GATGAAGTTAGCTGTGAAATGTCTATATATAACCCTAATGGAAGAAATGACTTTCGAGAA
ATAGAAGGTTTATTACCACCAAATTTAAATTACAACCAAATTATAGATGTTGTAATGTTC
AATGAGACAACAACAAATGTTCCTTCAATTATTTGTCGTCAATTTACGAACTTGAAACTT
TTATCTTTTTGGGTATCTGGCATTAATTTTATTAATCACGAATCTTTCGAATCGTGTGAT
AATATTGAAAAAATCATTTTGCCTGGTAATAATATCTTTCATATTGGAGAAAATACTTTT
GGAAATAATTTGGGTAGTCTCAGAGTTATAAATTTGGAGTACAATCAAATAAGTACTATT
AGTTTTAGTTCCTTCGGCTCTCAATCAATTCAAAAATTAAATTCATTTATTATCAGTTCA
AATTTGATAAATGCAATTGATTTGAATTGGTTTGATTCTGCCACAAGTCTAGCTTTTCTT
GATTTAGAAAAAAATGTTTGTATTGATAAACTTTTCATTGATGTCAACTTACATCAACAA
GAAGTTAGAAATCAATTGATTAGTTGCTTCAATAATTATGTAAATACAGGAACAACAATT
GCGAATACAATTTAA
>g13813.t1 Gene=g13813 Length=1384
MKALLLLSVVIVLILKCQGREIRTQCAFFNPLLNNFCNSATDKKVNFENIVRFSEKDDNI
ENSDKRYKEELLNNEPFIQCAYQFLTSFDVSCIMSIYNPQENNFDRIEGNLPPIATFNQV
TYVWIIGQHTVNIPTIICQQFPQLLFLDITSSRLNTINENSFTFCNNLQYIFLASNEILT
IPDNTFGNNLRNVFSILLTFNQLKTISSRSFSNEVLTSLNSFEADSNFIESIDPNWFDTA
NNLTYLNLINNLCVNQNFLNVHLNRSEVRSNLTECFNNYGNVETTTTTSTTTTTTSSPNE
SFIRCSYQLWGNEVSCELTIYNPFGRNDFTEIEGTLPPGTSYNQVTIVIASHQLTSNIPG
IICRLFPQLSLLRIQSSQVYIVNQESFEACQNAFEIYLPGNNITEIGTNTFGNNLRTLGI
IDLGFNHLKKISLSSFGSESIATLITVYLDSNVIDAIDPNWFDSAINLLNLDLSFNLCTS
QYFDNINQNRDQVRGALLTCFENYEGNEITTISTTSIQPDQDFIRCTYDFFEENELFCIL
NIHNPNGRNDFNEIEGTLPPNTNFNQVKWVSTIFQLTTNVPSIICYQFPELTILELVSCQ
ITTIDHHSFAGCNNMRLLNIFLNNITHIPDSTFGSNLRNFERIDISENQLQTLSFESFST
EFLNSLVSFMADLNFINEIDPKWFDSSVALRQLNLNSNLCVNQSFDHFTHTREQVRDVLM
PCFENYENRETTTIMPDDTFIRCDYGFREMNETFCVLSIYNPNGRNDFNRIEGDLPSGIS
YNQIRYVQAVSQWTSNVPTRICQQFPQLQSLGIWASNVTFINYESFKFCDNIFEILLGFN
DISYIPARTFDNNMWNLRNINFGYNKLTTLSLNSFGHNIASLVWVYLHFNSINAIESNWF
DSTQNLTLLDFRNNFCANQIFFDIHINRNQVRNQLINCFANYDLQQTTTPPIAPDETFIR
CNYTFWRPDEIRCEMTIFNINGNNNFDNIEGTLPINGTYDQVLFVYMNRQYTTNVPSIIC
KQFTRLIQLEMWYSHVNFLNHESFQFCNNIDLISLSGNHITRIGDGTFGSSLRNLKTIHF
FDNQITRLNFRSFSRESFEQLTRMHFDSNFINAIDPELFDSASSLFVLNLRNNLCISDSF
FDVGQNRSGVKNALKRCFENYEFDEPADGSFIRCRYITFDDEVSCEMSIYNPNGRNDFRE
IEGLLPPNLNYNQIIDVVMFNETTTNVPSIICRQFTNLKLLSFWVSGINFINHESFESCD
NIEKIILPGNNIFHIGENTFGNNLGSLRVINLEYNQISTISFSSFGSQSIQKLNSFIISS
NLINAIDLNWFDSATSLAFLDLEKNVCIDKLFIDVNLHQQEVRNQLISCFNNYVNTGTTI
ANTI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 36 | g13813.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 46 | 305 | 2.9E-16 |
| 37 | g13813.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 306 | 529 | 1.8E-15 |
| 33 | g13813.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 541 | 745 | 2.1E-17 |
| 35 | g13813.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 756 | 965 | 2.0E-16 |
| 34 | g13813.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 997 | 1151 | 2.2E-16 |
| 32 | g13813.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1173 | 1374 | 2.9E-17 |
| 2 | g13813.t1 | PANTHER | PTHR24372:SF72 | RELAXIN RECEPTOR 2 | 116 | 248 | 3.0E-64 |
| 8 | g13813.t1 | PANTHER | PTHR24372 | GLYCOPROTEIN HORMONE RECEPTOR | 116 | 248 | 3.0E-64 |
| 1 | g13813.t1 | PANTHER | PTHR24372:SF72 | RELAXIN RECEPTOR 2 | 354 | 473 | 3.0E-64 |
| 7 | g13813.t1 | PANTHER | PTHR24372 | GLYCOPROTEIN HORMONE RECEPTOR | 354 | 473 | 3.0E-64 |
| 5 | g13813.t1 | PANTHER | PTHR24372:SF72 | RELAXIN RECEPTOR 2 | 565 | 697 | 3.0E-64 |
| 11 | g13813.t1 | PANTHER | PTHR24372 | GLYCOPROTEIN HORMONE RECEPTOR | 565 | 697 | 3.0E-64 |
| 4 | g13813.t1 | PANTHER | PTHR24372:SF72 | RELAXIN RECEPTOR 2 | 781 | 912 | 3.0E-64 |
| 10 | g13813.t1 | PANTHER | PTHR24372 | GLYCOPROTEIN HORMONE RECEPTOR | 781 | 912 | 3.0E-64 |
| 6 | g13813.t1 | PANTHER | PTHR24372:SF72 | RELAXIN RECEPTOR 2 | 1001 | 1131 | 3.0E-64 |
| 12 | g13813.t1 | PANTHER | PTHR24372 | GLYCOPROTEIN HORMONE RECEPTOR | 1001 | 1131 | 3.0E-64 |
| 3 | g13813.t1 | PANTHER | PTHR24372:SF72 | RELAXIN RECEPTOR 2 | 1217 | 1344 | 3.0E-64 |
| 9 | g13813.t1 | PANTHER | PTHR24372 | GLYCOPROTEIN HORMONE RECEPTOR | 1217 | 1344 | 3.0E-64 |
| 39 | g13813.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 19 | - |
| 40 | g13813.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 3 | - |
| 41 | g13813.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 4 | 15 | - |
| 42 | g13813.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 16 | 19 | - |
| 38 | g13813.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 20 | 1384 | - |
| 25 | g13813.t1 | SMART | SM00369 | LRR_typ_2 | 165 | 188 | 31.0 |
| 30 | g13813.t1 | SMART | SM00369 | LRR_typ_2 | 190 | 213 | 22.0 |
| 24 | g13813.t1 | SMART | SM00369 | LRR_typ_2 | 216 | 239 | 96.0 |
| 28 | g13813.t1 | SMART | SM00369 | LRR_typ_2 | 415 | 438 | 43.0 |
| 20 | g13813.t1 | SMART | SM00369 | LRR_typ_2 | 441 | 464 | 390.0 |
| 26 | g13813.t1 | SMART | SM00369 | LRR_typ_2 | 588 | 611 | 25.0 |
| 22 | g13813.t1 | SMART | SM00369 | LRR_typ_2 | 612 | 635 | 160.0 |
| 23 | g13813.t1 | SMART | SM00369 | LRR_typ_2 | 637 | 660 | 50.0 |
| 29 | g13813.t1 | SMART | SM00369 | LRR_typ_2 | 854 | 877 | 37.0 |
| 21 | g13813.t1 | SMART | SM00369 | LRR_typ_2 | 879 | 902 | 41.0 |
| 18 | g13813.t1 | SMART | SM00369 | LRR_typ_2 | 1047 | 1070 | 220.0 |
| 19 | g13813.t1 | SMART | SM00369 | LRR_typ_2 | 1072 | 1095 | 43.0 |
| 27 | g13813.t1 | SMART | SM00369 | LRR_typ_2 | 1098 | 1121 | 44.0 |
| 17 | g13813.t1 | SMART | SM00369 | LRR_typ_2 | 1284 | 1307 | 0.36 |
| 15 | g13813.t1 | SUPERFAMILY | SSF52058 | L domain-like | 113 | 268 | 4.76E-15 |
| 16 | g13813.t1 | SUPERFAMILY | SSF52058 | L domain-like | 343 | 700 | 1.36E-23 |
| 13 | g13813.t1 | SUPERFAMILY | SSF52058 | L domain-like | 783 | 920 | 2.42E-15 |
| 14 | g13813.t1 | SUPERFAMILY | SSF52058 | L domain-like | 1004 | 1345 | 5.61E-22 |
| 31 | g13813.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 19 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed