Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13813 g13813.t2 isoform g13813.t2 32548860 32550043
chr_1 g13813 g13813.t2 exon g13813.t2.exon1 32548860 32550043
chr_1 g13813 g13813.t2 cds g13813.t2.CDS1 32548979 32550043
chr_1 g13813 g13813.t2 TSS g13813.t2 NA NA
chr_1 g13813 g13813.t2 TTS g13813.t2 NA NA

Sequences

>g13813.t2 Gene=g13813 Length=1184
GTACTCTACCGATAAATGGAACTTACGATCAAGTTCTTTTTGTCTATATGAATAGGCAAT
ATACTACAAATGTTCCATCTATAATTTGCAAACAATTTACTAGACTCATTCAACTAGAAA
TGTGGTATTCTCATGTAAATTTTTTAAATCATGAGTCATTTCAATTTTGCAACAATATCG
ATTTAATTTCTTTATCTGGAAATCACATAACAAGGATAGGTGATGGAACTTTTGGCAGCA
GTTTAAGAAATCTTAAAACGATTCATTTTTTTGATAATCAAATTACAAGATTAAACTTTA
GATCATTTAGCAGAGAATCATTTGAACAATTAACAAGGATGCATTTTGATTCAAATTTTA
TCAATGCTATCGATCCAGAGTTATTTGATTCTGCTTCAAGTCTTTTTGTTCTTAATTTGC
GTAACAATCTTTGTATAAGTGACAGCTTTTTTGATGTTGGACAGAATAGAAGTGGTGTAA
AAAATGCTTTGAAAAGATGTTTTGAAAATTATGAGTTTGATGAACCAGCAGATGGATCTT
TTATTCGATGTAGATATATTACATTTGACGATGAAGTTAGCTGTGAAATGTCTATATATA
ACCCTAATGGAAGAAATGACTTTCGAGAAATAGAAGGTTTATTACCACCAAATTTAAATT
ACAACCAAATTATAGATGTTGTAATGTTCAATGAGACAACAACAAATGTTCCTTCAATTA
TTTGTCGTCAATTTACGAACTTGAAACTTTTATCTTTTTGGGTATCTGGCATTAATTTTA
TTAATCACGAATCTTTCGAATCGTGTGATAATATTGAAAAAATCATTTTGCCTGGTAATA
ATATCTTTCATATTGGAGAAAATACTTTTGGAAATAATTTGGGTAGTCTCAGAGTTATAA
ATTTGGAGTACAATCAAATAAGTACTATTAGTTTTAGTTCCTTCGGCTCTCAATCAATTC
AAAAATTAAATTCATTTATTATCAGTTCAAATTTGATAAATGCAATTGATTTGAATTGGT
TTGATTCTGCCACAAGTCTAGCTTTTCTTGATTTAGAAAAAAATGTTTGTATTGATAAAC
TTTTCATTGATGTCAACTTACATCAACAAGAAGTTAGAAATCAATTGATTAGTTGCTTCA
ATAATTATGTAAATACAGGAACAACAATTGCGAATACAATTTAA

>g13813.t2 Gene=g13813 Length=354
MWYSHVNFLNHESFQFCNNIDLISLSGNHITRIGDGTFGSSLRNLKTIHFFDNQITRLNF
RSFSRESFEQLTRMHFDSNFINAIDPELFDSASSLFVLNLRNNLCISDSFFDVGQNRSGV
KNALKRCFENYEFDEPADGSFIRCRYITFDDEVSCEMSIYNPNGRNDFREIEGLLPPNLN
YNQIIDVVMFNETTTNVPSIICRQFTNLKLLSFWVSGINFINHESFESCDNIEKIILPGN
NIFHIGENTFGNNLGSLRVINLEYNQISTISFSSFGSQSIQKLNSFIISSNLINAIDLNW
FDSATSLAFLDLEKNVCIDKLFIDVNLHQQEVRNQLISCFNNYVNTGTTIANTI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g13813.t2 Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 2 126 0.0e+00
11 g13813.t2 Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 143 345 0.0e+00
3 g13813.t2 PANTHER PTHR45617:SF69 SI:DKEY-1J5.4 11 108 0.0e+00
5 g13813.t2 PANTHER PTHR45617 - 11 108 0.0e+00
2 g13813.t2 PANTHER PTHR45617:SF69 SI:DKEY-1J5.4 200 315 0.0e+00
4 g13813.t2 PANTHER PTHR45617 - 200 315 0.0e+00
1 g13813.t2 Pfam PF13855 Leucine rich repeat 231 275 2.3e-06
9 g13813.t2 SMART SM00369 LRR_typ_2 17 40 2.2e+02
8 g13813.t2 SMART SM00369 LRR_typ_2 42 65 4.3e+01
10 g13813.t2 SMART SM00369 LRR_typ_2 68 91 4.4e+01
7 g13813.t2 SMART SM00369 LRR_typ_2 254 277 3.6e-01
6 g13813.t2 SUPERFAMILY SSF52047 RNI-like 11 321 0.0e+00

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed