Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative BTB and MATH domain-containing protein 43.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13825 g13825.t5 TSS g13825.t5 32616005 32616005
chr_1 g13825 g13825.t5 isoform g13825.t5 32616480 32617790
chr_1 g13825 g13825.t5 exon g13825.t5.exon1 32616480 32617790
chr_1 g13825 g13825.t5 cds g13825.t5.CDS1 32616514 32617362
chr_1 g13825 g13825.t5 TTS g13825.t5 32617800 32617800

Sequences

>g13825.t5 Gene=g13825 Length=1311
TGATGAATATTCAAATTTAATAATATATTATGAAATGAAACTTCGTGATTTTTTTATGAG
TGAACTTTTAAATCGTGCAGAAGGGAAAATCGAAAAGATGTTTTATGAACATAAGCTTGG
AAAGTGTCTTAGTTCAAAAGATTTGTCTCGACACATACCTCATGTTATAAAGGATAAAAT
GATAGAAATAGTTGTACTTCTTCGTTTTATTGAGAACAAGGAAGAGAGCACATATGTTAA
TACAATAATGTCAAATCAATATGAAAAAATGTTCAATAATCCAGATTACAGTGACTTCAA
ATTAATCACATCCGAAAATGAAGAGATTTTCGTTCATAAATTATTTCTCTCAGCGAGATC
ACCGGTTTTTGATGCTATGATTAATACAAAGTTACTAGAAGGAACGGAAAAAAGGGCTAA
AATCGATGATATTGATCCAAAATCACTTAAAGAACTTATTCGCTTTATCTATTCAGGAAG
AGTTGACGAAATTGATCAAATCGCAAATGAACTTATATACGCTGCAGGAAAATATGAACT
TGAAGATCTCAAACCACTCTGTGTTCGATCTCTTGGTATCAATATAAGTAATGATAATTG
CTTAAATACATTTGTTCTGGCCGATTTATTTATGGAAGAAGATTTAAAAAAGTATACAAT
GGCTTTCATCAAGTTTAATTACGACAAAATCAAAAACAGTGAACAGTGGAAAAATTTAAC
AAAAGAGCAAGTTAAATTTTTATTGGATAAGCTGATGACTCCTGATCAAGATGGTTCAAA
TGTGAATTTAGTTACTACAATCACCATACAAAATTCACGTGCAATGCAGCCACAATTAGT
GATCGTTAATAATGATGTTACTGCTCCCGTTATTCCTCGTTAAATTCTAATGTTAATACG
TAATTCTATATTTTTATTTTTCTGCAATTCACATAATGTTTGGAAAATCCCATGCATTTT
TTTTTCGGAAAGTCCATTAACCTTAACATTGAATCGCATTCGTGAGTAATGAAATAATCA
TGCGGAACATACTTAATTTATTTCATTTTTTTCTTTGAATATGCAGTTGACTTTCTTCAA
ATTCGATTCAATAAAGATATCAAATGAAATAGTAACCACGACATTGAATGTTATTTTAGC
GTCATAGTGTTATAAAATTCAATGTAAACCACAAAAAGGGTCATTGGATTTTAATAAAAA
TATTTTCAATTGTACGTGATAAAATGATTAATGTTATGATTCATTTCTTTCCACTAACTT
TAAATGTAAAAGTAAATAGATCAAAATAAAACGGAACAAGAAGATATAAAA

>g13825.t5 Gene=g13825 Length=282
MKLRDFFMSELLNRAEGKIEKMFYEHKLGKCLSSKDLSRHIPHVIKDKMIEIVVLLRFIE
NKEESTYVNTIMSNQYEKMFNNPDYSDFKLITSENEEIFVHKLFLSARSPVFDAMINTKL
LEGTEKRAKIDDIDPKSLKELIRFIYSGRVDEIDQIANELIYAAGKYELEDLKPLCVRSL
GINISNDNCLNTFVLADLFMEEDLKKYTMAFIKFNYDKIKNSEQWKNLTKEQVKFLLDKL
MTPDQDGSNVNLVTTITIQNSRAMQPQLVIVNNDVTAPVIPR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g13825.t5 CDD cd14733 BACK 185 238 0.00000
8 g13825.t5 Gene3D G3DSA:3.30.710.10 Potassium Channel Kv1.1; Chain A 65 178 0.00000
7 g13825.t5 Gene3D G3DSA:1.25.40.420 - 183 245 0.00000
3 g13825.t5 PANTHER PTHR24413:SF213 FI01029P-RELATED 56 234 0.00000
4 g13825.t5 PANTHER PTHR24413 SPECKLE-TYPE POZ PROTEIN 56 234 0.00000
2 g13825.t5 Pfam PF00651 BTB/POZ domain 77 180 0.00000
1 g13825.t5 Pfam PF07707 BTB And C-terminal Kelch 189 238 0.00017
9 g13825.t5 ProSiteProfiles PS50097 BTB domain profile. 86 154 17.19000
6 g13825.t5 SMART SM00225 BTB_4 86 184 0.00000
5 g13825.t5 SUPERFAMILY SSF54695 POZ domain 69 180 0.00000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values