Gene loci information

Transcript annotation

  • This transcript has been annotated as Tyrosine aminotransferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13832 g13832.t5 TTS g13832.t5 32627693 32627693
chr_1 g13832 g13832.t5 isoform g13832.t5 32627774 32630336
chr_1 g13832 g13832.t5 exon g13832.t5.exon1 32627774 32627968
chr_1 g13832 g13832.t5 cds g13832.t5.CDS1 32627774 32627968
chr_1 g13832 g13832.t5 exon g13832.t5.exon2 32628031 32628098
chr_1 g13832 g13832.t5 cds g13832.t5.CDS2 32628031 32628098
chr_1 g13832 g13832.t5 exon g13832.t5.exon3 32628175 32628930
chr_1 g13832 g13832.t5 cds g13832.t5.CDS3 32628175 32628930
chr_1 g13832 g13832.t5 exon g13832.t5.exon4 32628995 32629178
chr_1 g13832 g13832.t5 cds g13832.t5.CDS4 32628995 32629178
chr_1 g13832 g13832.t5 exon g13832.t5.exon5 32630185 32630336
chr_1 g13832 g13832.t5 cds g13832.t5.CDS5 32630185 32630202
chr_1 g13832 g13832.t5 TSS g13832.t5 32630493 32630493

Sequences

>g13832.t5 Gene=g13832 Length=1355
ATGGCAACGAAAGTCGAACAGACGACTAATGAAGTATTGCATTTTATTGGAAATTTTGGT
GCAAGTGAAAAGCCAAAGCCAATCGACAATAAAAGAAAGCTTCTTCGTCGTCAAAGTACT
GTTCGTGATTTAAGATGGAATGTAAAAATAAGAATTCTTTTATAGACGCAAAATATTTTT
ATGACATTTTAGGTGACCCCACAACTTTTGGAAATTTGCTACCTGCGAATGAAATTCTTG
ATGCCATGAAAAAAGTTATTGATGATAAAAATTTTAATGGTTATGCACCCTCAGTTGGAT
TCATAGAAGCACGAGAAGCAGTTGCTGAGTATTCCGCTCATCAAGGAGTCATAAAAGAAA
TTTCTGCAAAAGATGTAATTTTGTGTTCAGGCTGCAGTTGTGCACTCGATCTTTGCATAG
CTGCAATTGCCAATGAAGGACAAAATATTTTGATTCCAAAGCCAGGATTTTCAATTTACA
GAACTTTAGCGGAAGGTTTTGGAATCGAATGTCGTTCATATAATTTAATTCCAGAGCAAG
GTTGGGAAATTGATTTGGATCATTTGGAAGAATTAATTGATGAAAATACTGCCGCCATTA
TTGTTACCAATCCATCAAATCCTTGTGGCAGTGTGTTCAGTAAGCAACACATTTTAGATA
TTTTAGAGATTGCTGAGCGTCACTATGTACCTATTATTGCTGATGAAATTTATGAACATT
TTGTATTTCCTGGCAATGAATATTTTTCAATGGCTTCATTGTCAAAAAATGTACCTATAT
TAAGCTGTGGTGGTACTACTAAACGATTTTTAGTGCCAGGTTGGCGTTTGGGATGGATTA
TTGTTCATGATCGTCATGGAGCATTTAGTGAAGTCAGACAGGGACTCTTAAATTTATCGG
CCAGAATTTTAGGTCCAAATTCACTTGTGCAAGGAGCACTGCCAGCAATTCTTAAAAATA
CTCCACAAAAGTTTTATGATGAACTTGTTGAGACACTTCAAAATCATGCTAATATTGCTT
ATTCAATGTTAAAAGAAATTCCTGGTTTAACACCAATTATGCCACAAGGTGCAATGTATA
TGATGGTTCTCCTGGATATGAAAAATTTTCCGGAGTTTCATGATGAACTTGATTTTGTTC
AATCTCTTGTGGCTGAGCAAAGTGTCTTTTGTCTTCCCGGAAAATGTTTCGATATTGATG
ATTTCATACGGATTGTACTAACAGTTCCAAAAGAGATGATCATCGAAGCATGTGAACGAA
TTCAAGAGTTTTGTGAAAATCATTATCGACCCCCAAAAATTGATGAAGAAATTGACGATC
TTGCAACAAATTTTATTAAAATTACAGATTTTTGA

>g13832.t5 Gene=g13832 Length=406
MECKNKNSFIDAKYFYDILGDPTTFGNLLPANEILDAMKKVIDDKNFNGYAPSVGFIEAR
EAVAEYSAHQGVIKEISAKDVILCSGCSCALDLCIAAIANEGQNILIPKPGFSIYRTLAE
GFGIECRSYNLIPEQGWEIDLDHLEELIDENTAAIIVTNPSNPCGSVFSKQHILDILEIA
ERHYVPIIADEIYEHFVFPGNEYFSMASLSKNVPILSCGGTTKRFLVPGWRLGWIIVHDR
HGAFSEVRQGLLNLSARILGPNSLVQGALPAILKNTPQKFYDELVETLQNHANIAYSMLK
EIPGLTPIMPQGAMYMMVLLDMKNFPEFHDELDFVQSLVAEQSVFCLPGKCFDIDDFIRI
VLTVPKEMIIEACERIQEFCENHYRPPKIDEEIDDLATNFIKITDF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g13832.t5 CDD cd00609 AAT_like 30 378 6.71098E-87
5 g13832.t5 Gene3D G3DSA:3.90.1150.10 Aspartate Aminotransferase 19 380 4.3E-130
6 g13832.t5 Gene3D G3DSA:3.40.640.10 - 32 276 4.3E-130
2 g13832.t5 PANTHER PTHR45744 TYROSINE AMINOTRANSFERASE 19 385 1.7E-156
3 g13832.t5 PANTHER PTHR45744:SF2 TYROSINE AMINOTRANSFERASE 19 385 1.7E-156
7 g13832.t5 PIRSF PIRSF000517 Tyr_transaminase 6 397 8.3E-163
1 g13832.t5 Pfam PF00155 Aminotransferase class I and II 20 376 2.1E-70
9 g13832.t5 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 220 233 -
4 g13832.t5 SUPERFAMILY SSF53383 PLP-dependent transferases 21 383 3.32E-86
10 g13832.t5 TIGRFAM TIGR01264 tyr_amTase_E: tyrosine aminotransferase 19 384 1.2E-171
11 g13832.t5 TIGRFAM TIGR01265 tyr_nico_aTase: tyrosine/nicotianamine family aminotransferase 19 384 1.9E-160

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0009072 aromatic amino acid family metabolic process BP
GO:0009058 biosynthetic process BP
GO:0006520 cellular amino acid metabolic process BP
GO:0008483 transaminase activity MF
GO:0004838 L-tyrosine:2-oxoglutarate aminotransferase activity MF
GO:0003824 catalytic activity MF
GO:0030170 pyridoxal phosphate binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed