General information for g13839.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein Mo25.
Parent gene
- The parent gene g13839 is located on chr_1: 32737232..32737698 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13839 | g13839.t5 | isoform | g13839.t5 | 32734276 | 32737640 |
| chr_1 | g13839 | g13839.t5 | exon | g13839.t5.exon1 | 32734276 | 32736093 |
| chr_1 | g13839 | g13839.t5 | TTS | g13839.t5 | 32734283 | 32734283 |
| chr_1 | g13839 | g13839.t5 | cds | g13839.t5.CDS1 | 32735635 | 32736078 |
| chr_1 | g13839 | g13839.t5 | exon | g13839.t5.exon2 | 32737391 | 32737502 |
| chr_1 | g13839 | g13839.t5 | exon | g13839.t5.exon3 | 32737593 | 32737640 |
| chr_1 | g13839 | g13839.t5 | TSS | g13839.t5 | 32737725 | 32737725 |
Sequences
>g13839.t5 Gene=g13839 Length=1978
ATGCCTTTTTTTGGTAAATCACAGAAATCTCCAGCCGAGCTTGTGAAGATGGTGAATATA
TTATTAGGCTCTAAAAGAGGCTCTGAAAGCATTAGAAACGCTTAAAGCGGGTGGTGATAA
AAAGGCAGAAAAGGCACAGGAGGATGTCAGTAAAAATCTGGTGTCAATCAAAAATATGCT
CTATGGGACATCAGATTCGGAGCCTCAAACAGATATTGTCGTATCACAATTAGCACAGGA
ACTGTATAATAGTAATCTTCTTCTCCTACTCATACAAAATCTTAATCAAATTGACTTTGA
AGGCAAAAAAGATGTTGCACTAGTGTTCAATAATGTACTTAGAAGACAAATCGGAACTCG
TTCACCGACTGTCGAATATATCTGCACGAAACCTGAAATTTTATTTACACTCATGGCTGG
TTACGAACATCAAGAAATAGCACTCAATTGCGGCACAATGCTGCGAGAATGTGCACGCTA
TGAGGCACTCGCTAAAATCATGCTTTATTCAGATGAGTTCTTCAACTTTTTCCAGTACGT
TGAAGTGTCAACATTCGATATCGCTAGCGATGCATTTTCAACTTTTAAGGTATATAAAAT
AAAATTATATAGCAGATAAGTCATGTATTTTGATAATTTTGTCTCGTGCTTATAGGAACT
GCTTACCCGTCATAAAATTCTTTGTGCGGAATTTTTGGAAACGAATTATGATAAAGTTTT
TACTCATTACCAACGGTTATTGAATTCAGAAAACTACGTTACAAGACGTCAGAGCTTGAA
GCTTCTTGGCGAATTGTTGCTTGATCGTCACAATTTTACGGTTAGTTAAGAAAACATTTG
ATTCTATTCAATATCATAAAGTTCTATTTTTTACTCATAAAATTTTTTTATAGGTGATGA
CGAAATACATTTCAAATCCCGACAATTTAAAATTGATGATGAATATGTTGAGAGAAAAAT
CAAGAAACATTCAATTTGAAGCCTTCCATGTTTTTAAGGTATAAAATACACTCATGTATA
TAATTTAATTACTATATAATATTGCAATGAAATTTTTTAATTCAAGGTTTTTGTGGCCAA
TCCTAATAAACCCAAGCCAATATTGGAAATTCTATTGCGCAATCAAGATAAGCTTGTTGA
TTTTCTTACACGCTTTCATACGGAACGAAGTGAAGATGAACAGTTTAATGACGAGAAAGC
ATACCTTATTAAGCAAATAAAGGAGTTGAAACCGATTCAAACAGACGGCACATCACAATC
ATCTCAGCAGCAATAGCCCGTTAATTAAGTTTCTCCTTTTATTTCTCTTTGATCTATAAT
TTCTTCATTTACTTTAATAATGAAAATTAAATGCATGCAAAAGAATCCTTTTTTAAAAGA
TTATTTTTTTCTCTATACAAGTTCTTTTGCAATGACCATTTTTATTTTGTGGTGTTTCTT
CTTTTCTCTACTACTCTTTTCACGAAACAAAAACAATTATCGCGATAATTTGATTGATAC
ATTCAAATAAAAAAAAATTTAAGTTGTAAATCCCTCCTCATTATCCTTTTTAGTGGATTA
AATGGATGATGGGTATTTTTTTGGAAAGAAAATTTTATTTATATAAGAAGCAAATATGTT
ATCAAGATTAACAGTTTTTCAACAAAAAAATCTTTTACTATTTTTTTTTTAAATTAATTT
TAGCAAAATGATTTTACTAAAATCAAACACAACAAAGTATATTTTTCCAAGACTTTAATA
GAACTATCATACACCGATTTTTATTAAGTTTTCTTTCCACATTTGTAATGAATTTATTGG
AGAAGAAGAGCAGAAAATTGATAGTTAGAAAGAATATATGAGGAGAAAGTTGAGTTCATT
GCGAAATTATTTAATTGATATAAATATAATTTATTCATTAAAACATTTTCCTGATAGAAG
ATTGTTAAGATCGATACATTGATAAAATAGATTTAGAGATAAAAACGCTGGAAAATTT
>g13839.t5 Gene=g13839 Length=147
MLYGTSDSEPQTDIVVSQLAQELYNSNLLLLLIQNLNQIDFEGKKDVALVFNNVLRRQIG
TRSPTVEYICTKPEILFTLMAGYEHQEIALNCGTMLRECARYEALAKIMLYSDEFFNFFQ
YVEVSTFDIASDAFSTFKVYKIKLYSR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g13839.t5 | Gene3D | G3DSA:1.25.10.10 | - | 1 | 144 | 0 |
| 2 | g13839.t5 | PANTHER | PTHR10182:SF11 | CALCIUM-BINDING PROTEIN 39 | 1 | 139 | 0 |
| 3 | g13839.t5 | PANTHER | PTHR10182 | CALCIUM-BINDING PROTEIN 39-RELATED | 1 | 139 | 0 |
| 1 | g13839.t5 | Pfam | PF08569 | Mo25-like | 1 | 139 | 0 |
| 4 | g13839.t5 | SUPERFAMILY | SSF48371 | ARM repeat | 1 | 143 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
