General information for g13843.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Type II inositol 3,4-bisphosphate 4-phosphatase.
Parent gene
- The parent gene g13843 is located on chr_1: 32760780..32761899 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13843 | g13843.t1 | TSS | g13843.t1 | 32754259 | 32754259 |
| chr_1 | g13843 | g13843.t1 | isoform | g13843.t1 | 32754515 | 32761804 |
| chr_1 | g13843 | g13843.t1 | exon | g13843.t1.exon1 | 32754515 | 32754626 |
| chr_1 | g13843 | g13843.t1 | cds | g13843.t1.CDS1 | 32754515 | 32754626 |
| chr_1 | g13843 | g13843.t1 | exon | g13843.t1.exon2 | 32755440 | 32755568 |
| chr_1 | g13843 | g13843.t1 | cds | g13843.t1.CDS2 | 32755440 | 32755568 |
| chr_1 | g13843 | g13843.t1 | exon | g13843.t1.exon3 | 32757402 | 32757575 |
| chr_1 | g13843 | g13843.t1 | cds | g13843.t1.CDS3 | 32757402 | 32757575 |
| chr_1 | g13843 | g13843.t1 | exon | g13843.t1.exon4 | 32757634 | 32757837 |
| chr_1 | g13843 | g13843.t1 | cds | g13843.t1.CDS4 | 32757634 | 32757837 |
| chr_1 | g13843 | g13843.t1 | exon | g13843.t1.exon5 | 32758020 | 32758177 |
| chr_1 | g13843 | g13843.t1 | cds | g13843.t1.CDS5 | 32758020 | 32758177 |
| chr_1 | g13843 | g13843.t1 | exon | g13843.t1.exon6 | 32758249 | 32758638 |
| chr_1 | g13843 | g13843.t1 | cds | g13843.t1.CDS6 | 32758249 | 32758638 |
| chr_1 | g13843 | g13843.t1 | exon | g13843.t1.exon7 | 32758719 | 32760599 |
| chr_1 | g13843 | g13843.t1 | cds | g13843.t1.CDS7 | 32758719 | 32760599 |
| chr_1 | g13843 | g13843.t1 | exon | g13843.t1.exon8 | 32760664 | 32760780 |
| chr_1 | g13843 | g13843.t1 | cds | g13843.t1.CDS8 | 32760664 | 32760780 |
| chr_1 | g13843 | g13843.t1 | exon | g13843.t1.exon9 | 32760886 | 32761125 |
| chr_1 | g13843 | g13843.t1 | cds | g13843.t1.CDS9 | 32760886 | 32761125 |
| chr_1 | g13843 | g13843.t1 | exon | g13843.t1.exon10 | 32761202 | 32761804 |
| chr_1 | g13843 | g13843.t1 | cds | g13843.t1.CDS10 | 32761202 | 32761804 |
| chr_1 | g13843 | g13843.t1 | TTS | g13843.t1 | NA | NA |
Sequences
>g13843.t1 Gene=g13843 Length=4008
ATGAGATTTAATGTGAAGGAAGTTAGAGAGTTAGCTACGCAACATAAATGTGAAAAAGAA
GGCAATCTGTTCTTTCGTGAGCGTCAGGAAGGCTTTTTTCGTAAAGCAGAAGGTGAAGCA
AATACTGATAAAACTGGATTAAGTTGCATTAATCTTAAGATTAATAACAATAATAAGTCA
CATAATCCAAAAATAACCCGAAGAAGATCATTCAGTTGTATTGGAGTTGGATTTTCAAAA
GTCAGTAGTCAAAGATGGTGTAAATTGCGTGGAAATTTGCTATTTTATTTTAAAACGAAC
GATCAATTCTCAGAGCCAGCAGGAGTGATTGTACTTGAAAAATATCGTGTAACGATTCCC
AATGAGGCTTCTTTTTCTAATAGTGAAAATTTTGAAGGCTTTCCATTCTTTATAGAATTT
GAAGACGGCTTAAATCAAAGACTTGGTGCAACGACAGAGCAAGAAAGGAATGAGTGGGTA
CAAGCACTAAAAATGGCAGGATATGATTTGATGAGAGCCCAACTTCAATATTTACGTGAG
CAGATTGAAAAGAGACGTGCAAGTCACAAAATGGATGTAGATGTTGACATGCATCGTTTA
CAGACTGGCAATAATATAGATTTCTCTGAAGTTCCCATTTGTGAGAGTGCAATATCATGT
GACAACTTGATATGTGATGCATATGGAAAACCACCGAATGCGTCGATTGTAGTTCAAGTG
ACAGCTCCTAATGGTGGCGGTGGTTGGATCAAATATGGAAGAACTGAAGTTATTGAACGT
TCATCAAATCCCCAATTTCTCTGTACAATAGTATTTCGTGCATCAGATGGATTAAATGCA
AAAACCATGATTCGATTTACCGCATACGATGTACGAGAGAAAGTCTCACAAACTGCAGTG
CCACTAGGCTTCGCTGAGATTTCGTTAGGGGTCATTCAAGATACAGCTAGGCTACGAATT
CCGATTGGATCACAAAATAATACTGTTGGCTTTATCACTATTGTTACATTCACACCCGAG
CATGACAAAAAACTTCGCTCACCAGCTAAAGTGAATGAACATCAGAGTGTTGGACATCGT
AGGTCACAATCTCTTCCACCTAAATTGGGAGTGAAACTTTTTATTCCAAATCATATGAAA
CTTCCATTAATTTTCACAAATCCAAACATTCATACATATAGATTGCATTCAGGACTTGCT
GGTGGTGATATTAGCGTATATGAGTTTATGATGGAAAGTATGCTATGTTACACTATTCCG
CAACAACTCTTATCAATTTGGATAATGCGCGAGAAAGAGTTGCTGCAAGAGATAAGTGCA
ATGGGTGAATTAGGTGGTGAATGGAAAAATAAACAATTAGAGTTACTTGATGCGCATCTA
CGCTTATTAAGAGATTATTCACAAAGTAAGCAAAATTTGCAACATCACAATGGGCGCGGT
GGGAAATTTTTCAAGCCCTCTGCGAAACGAAATGATGAGACTTTGGAATTTGCGCCAATT
AATTTGCACCTACAACGGATGGTAGCACACAATGATACGTTGAAAAAATCTGGTTGTTTA
GATGTTGTCACAGTTGGTGCATTTACAAGACATACGGGTAAACAAAAGACTGGCGGACTT
ATAAAGCTACTTCATCAAATAAAAGATACGCCAACAAAAACTGAACAAGTACAGCATAAA
GTTCAGGCAGCTAATGATGTCGTGCAATCAATCAAACAATTGAGACGAGAAATTGTTGAA
ATTATGTCACAACTATTGCTTTTGGCAAAAACTAAATCAACTAAAAACATGCTTCCACTT
TGCAATGAAATGATGATTAAGACACGTGCACTATTAAACATTTGGGAGCCTTCATTGGTA
GAAGAAGCATTTCGATTTATCGAACAGCATCGAATAATTGATGAACCTGACAATACAATT
ATGCCATTATCTCCATTTAAAAAAATTACACAGCAGCTGTGTGCTTTAGACTTGAAAAGT
CCAGAACTTGAAGATTTTGCAACACCCAATGGACCACAACCAGATCTATGGCCACAACAA
CAAAAAATTCCTAAATCTGATTCTAAAAATTTCATGAAAGCAAAATCTCCTTCTGCTACT
GATCTAAACGTGATTGCTAATGTTCAGAATGCAGTTCAGTCGTATCAAAATTTTAATTCA
AGCGAAAAAATGTCAATGTCACTCCCACCTGTTTTTACTACATCGGGACAAATTAAAGAA
AATGTGCATGAATTAAGATTTAGTGAGACACATTTTGATGTAAATGGTGATGTATCGTCA
GAAAATAGTCATGAAAATGGAAAAGAAGTTAAAGAGAAGGAAGAAGAAGAAAGTGAAATA
TCATCTCTTACATCAGATCAGTTACTAGAAAGTAAGAATGAATTGCTATCAAGTCTTTAT
GATGAGAATGGTTATCTAATTGAAAACACATCAATCGTTTTAAATCATAATGGTGCTTTT
CTTGATACTAAATTGTGTCATAATTCGGACTTTTATCGACCTTCTGAAGAACCAGAGCCA
TTAGATTTGACACAATTAAATATTGAAGCGAGTGTTATGTGTTTAGTGAGCAAGGTCAAA
TTTTTATGTGGTAGATGTGGCTCACCTGCAATTCGTCTTCGTAATCCTAGAAATTCAATT
TCATCACTCAAACGTGATTCTGAATCAGTCGTGACAAGTCAACCGACGGGTTCAAATGAA
AATGGAAATAGAAATTCAACATCTTCGATTACGGCGCTAACAAATGGAAGCAATAAGACG
CCGAATATGCCGAGTAAAGATCTAAATTTAGCATTAACAGAGGCAGTGGGAGAGGTTACG
AGAAAGGTGAAAAAGGGCAATAAATTTACTGATGGATTAGATTTATCATTGACAACCGAT
TGGGCGAGTGAATTACGACCGTCAATGAAAAAATTGAGGCAAGCGATGGATGGTTTACTG
AAAACTGTACGTCTTATACATTCAGTGCAGCGATTACATCAAGATACGAAGAAAATCACA
TCAAATTTGGCTATTATGTATCGTCGCGATGTTTGCTTTTCACAAGCTCTCACAACACTT
ATTACAGCATTAATGGCAAAATTTTGGGGAACAAATATATCAGAGCATTATATCAATGTC
ATCTGTGCTCTCGGTCCATTGGTCTACTTTGAAGGATATTTATCGTTTTATGGAAGTGAA
TGGGATTTTTGGTCCGATATGAATATTGCAATCGAAGATTTATCGACAGTCAATTTCACA
CTTGTACGACACAATACAAAAGCAATGCCTATGCCAAAAGTTAGTGGTTCGCGTCAATCT
ATTGTGGTTTATTTGCCAGTACCAGATTACGTTTACGCTTTACTGCCACCATCGAATGGT
CAATCGCCATTGAATCGTGATCAAATTACTTTTAAAGTGACACCTGTTTTCTTCAATATT
GGAATAAATGAAATGGCAACATTAGCTGAATCACTAGGATATTGTAAAGAACAACATCGT
TCGAATTTTGATAATTTTGATCGACTTAAACGTTATCATATCATGTATAAGAAAATACCT
ATTCCTGAACCTAAAAGTAATGATAATTCACCTGGGAAAAATTATTTCATTCAAACACAA
TCGACAGTAAAAGATAATGTTGTGTCGGAACAGATTGTGACAAATATGTTGGATAAAATG
GAAGAATTATTGAGAGTGAATAGCTCTAAGAATGTAAAAGTACTCCATGTAGCAGAAGAT
ATTACAAGAGCACTCAATGGATTAAGAGTCACTTCATGTAAGAGTGCTAAAGATCGTACT
GGCATGGCAGTGACATTGGAGCAAGCGAGAATTTTGCAACAAGAATTTCATCTGCCAGCA
GGAAATCTTCAAAATGTTCTTGATGTAATGCGATCAGAGGGTACTCGTCTTGATAATACT
TTCAAGAACATTTGCAGACGCAAGTATGCATTTAATTTGCCTCAAGTTCTCGCACTTCCA
CCACTTTATCGTCCTCCGACAGCTTCATTTGGAAAAGCACAAACTTAA
>g13843.t1 Gene=g13843 Length=1335
MRFNVKEVRELATQHKCEKEGNLFFRERQEGFFRKAEGEANTDKTGLSCINLKINNNNKS
HNPKITRRRSFSCIGVGFSKVSSQRWCKLRGNLLFYFKTNDQFSEPAGVIVLEKYRVTIP
NEASFSNSENFEGFPFFIEFEDGLNQRLGATTEQERNEWVQALKMAGYDLMRAQLQYLRE
QIEKRRASHKMDVDVDMHRLQTGNNIDFSEVPICESAISCDNLICDAYGKPPNASIVVQV
TAPNGGGGWIKYGRTEVIERSSNPQFLCTIVFRASDGLNAKTMIRFTAYDVREKVSQTAV
PLGFAEISLGVIQDTARLRIPIGSQNNTVGFITIVTFTPEHDKKLRSPAKVNEHQSVGHR
RSQSLPPKLGVKLFIPNHMKLPLIFTNPNIHTYRLHSGLAGGDISVYEFMMESMLCYTIP
QQLLSIWIMREKELLQEISAMGELGGEWKNKQLELLDAHLRLLRDYSQSKQNLQHHNGRG
GKFFKPSAKRNDETLEFAPINLHLQRMVAHNDTLKKSGCLDVVTVGAFTRHTGKQKTGGL
IKLLHQIKDTPTKTEQVQHKVQAANDVVQSIKQLRREIVEIMSQLLLLAKTKSTKNMLPL
CNEMMIKTRALLNIWEPSLVEEAFRFIEQHRIIDEPDNTIMPLSPFKKITQQLCALDLKS
PELEDFATPNGPQPDLWPQQQKIPKSDSKNFMKAKSPSATDLNVIANVQNAVQSYQNFNS
SEKMSMSLPPVFTTSGQIKENVHELRFSETHFDVNGDVSSENSHENGKEVKEKEEEESEI
SSLTSDQLLESKNELLSSLYDENGYLIENTSIVLNHNGAFLDTKLCHNSDFYRPSEEPEP
LDLTQLNIEASVMCLVSKVKFLCGRCGSPAIRLRNPRNSISSLKRDSESVVTSQPTGSNE
NGNRNSTSSITALTNGSNKTPNMPSKDLNLALTEAVGEVTRKVKKGNKFTDGLDLSLTTD
WASELRPSMKKLRQAMDGLLKTVRLIHSVQRLHQDTKKITSNLAIMYRRDVCFSQALTTL
ITALMAKFWGTNISEHYINVICALGPLVYFEGYLSFYGSEWDFWSDMNIAIEDLSTVNFT
LVRHNTKAMPMPKVSGSRQSIVVYLPVPDYVYALLPPSNGQSPLNRDQITFKVTPVFFNI
GINEMATLAESLGYCKEQHRSNFDNFDRLKRYHIMYKKIPIPEPKSNDNSPGKNYFIQTQ
STVKDNVVSEQIVTNMLDKMEELLRVNSSKNVKVLHVAEDITRALNGLRVTSCKSAKDRT
GMAVTLEQARILQQEFHLPAGNLQNVLDVMRSEGTRLDNTFKNICRRKYAFNLPQVLALP
PLYRPPTASFGKAQT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g13843.t1 | Gene3D | G3DSA:2.30.29.30 | - | 68 | 167 | 1.9E-12 |
| 7 | g13843.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 752 | 785 | - |
| 9 | g13843.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 762 | 780 | - |
| 8 | g13843.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 877 | 907 | - |
| 2 | g13843.t1 | PANTHER | PTHR12187:SF11 | AGAP000124-PA | 1 | 1335 | 4.2E-278 |
| 3 | g13843.t1 | PANTHER | PTHR12187 | AGAP000124-PA | 1 | 1335 | 4.2E-278 |
| 1 | g13843.t1 | Pfam | PF00169 | PH domain | 83 | 166 | 2.0E-6 |
| 11 | g13843.t1 | ProSiteProfiles | PS50003 | PH domain profile. | 84 | 168 | 9.011 |
| 6 | g13843.t1 | SMART | SM00233 | PH_update | 17 | 170 | 9.6E-8 |
| 4 | g13843.t1 | SUPERFAMILY | SSF50729 | PH domain-like | 77 | 177 | 4.29E-14 |
| 5 | g13843.t1 | SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 218 | 327 | 2.07E-7 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016316 | phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K01109 (inositol polyphosphate-4-phosphatase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
