General information for g13843.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Type II inositol 3,4-bisphosphate 4-phosphatase.
Parent gene
- The parent gene g13843 is located on chr_1: 32760780..32761899 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13843 | g13843.t2 | TSS | g13843.t2 | 32754259 | 32754259 |
| chr_1 | g13843 | g13843.t2 | isoform | g13843.t2 | 32754515 | 32761804 |
| chr_1 | g13843 | g13843.t2 | exon | g13843.t2.exon1 | 32754515 | 32754626 |
| chr_1 | g13843 | g13843.t2 | cds | g13843.t2.CDS1 | 32754515 | 32754626 |
| chr_1 | g13843 | g13843.t2 | exon | g13843.t2.exon2 | 32757402 | 32757575 |
| chr_1 | g13843 | g13843.t2 | cds | g13843.t2.CDS2 | 32757402 | 32757575 |
| chr_1 | g13843 | g13843.t2 | exon | g13843.t2.exon3 | 32757634 | 32757837 |
| chr_1 | g13843 | g13843.t2 | cds | g13843.t2.CDS3 | 32757634 | 32757837 |
| chr_1 | g13843 | g13843.t2 | exon | g13843.t2.exon4 | 32758020 | 32758177 |
| chr_1 | g13843 | g13843.t2 | cds | g13843.t2.CDS4 | 32758020 | 32758177 |
| chr_1 | g13843 | g13843.t2 | exon | g13843.t2.exon5 | 32758249 | 32758638 |
| chr_1 | g13843 | g13843.t2 | cds | g13843.t2.CDS5 | 32758249 | 32758638 |
| chr_1 | g13843 | g13843.t2 | exon | g13843.t2.exon6 | 32758719 | 32760599 |
| chr_1 | g13843 | g13843.t2 | cds | g13843.t2.CDS6 | 32758719 | 32760599 |
| chr_1 | g13843 | g13843.t2 | exon | g13843.t2.exon7 | 32760664 | 32760780 |
| chr_1 | g13843 | g13843.t2 | cds | g13843.t2.CDS7 | 32760664 | 32760780 |
| chr_1 | g13843 | g13843.t2 | exon | g13843.t2.exon8 | 32760886 | 32761125 |
| chr_1 | g13843 | g13843.t2 | cds | g13843.t2.CDS8 | 32760886 | 32761125 |
| chr_1 | g13843 | g13843.t2 | exon | g13843.t2.exon9 | 32761202 | 32761804 |
| chr_1 | g13843 | g13843.t2 | cds | g13843.t2.CDS9 | 32761202 | 32761804 |
| chr_1 | g13843 | g13843.t2 | TTS | g13843.t2 | NA | NA |
Sequences
>g13843.t2 Gene=g13843 Length=3879
ATGAGATTTAATGTGAAGGAAGTTAGAGAGTTAGCTACGCAACATAAATGTGAAAAAGAA
GGCAATCTGTTCTTTCGTGAGCGTCAGGAAGGCTTTTTTCGTAAAGCAGAAGTCAGTAGT
CAAAGATGGTGTAAATTGCGTGGAAATTTGCTATTTTATTTTAAAACGAACGATCAATTC
TCAGAGCCAGCAGGAGTGATTGTACTTGAAAAATATCGTGTAACGATTCCCAATGAGGCT
TCTTTTTCTAATAGTGAAAATTTTGAAGGCTTTCCATTCTTTATAGAATTTGAAGACGGC
TTAAATCAAAGACTTGGTGCAACGACAGAGCAAGAAAGGAATGAGTGGGTACAAGCACTA
AAAATGGCAGGATATGATTTGATGAGAGCCCAACTTCAATATTTACGTGAGCAGATTGAA
AAGAGACGTGCAAGTCACAAAATGGATGTAGATGTTGACATGCATCGTTTACAGACTGGC
AATAATATAGATTTCTCTGAAGTTCCCATTTGTGAGAGTGCAATATCATGTGACAACTTG
ATATGTGATGCATATGGAAAACCACCGAATGCGTCGATTGTAGTTCAAGTGACAGCTCCT
AATGGTGGCGGTGGTTGGATCAAATATGGAAGAACTGAAGTTATTGAACGTTCATCAAAT
CCCCAATTTCTCTGTACAATAGTATTTCGTGCATCAGATGGATTAAATGCAAAAACCATG
ATTCGATTTACCGCATACGATGTACGAGAGAAAGTCTCACAAACTGCAGTGCCACTAGGC
TTCGCTGAGATTTCGTTAGGGGTCATTCAAGATACAGCTAGGCTACGAATTCCGATTGGA
TCACAAAATAATACTGTTGGCTTTATCACTATTGTTACATTCACACCCGAGCATGACAAA
AAACTTCGCTCACCAGCTAAAGTGAATGAACATCAGAGTGTTGGACATCGTAGGTCACAA
TCTCTTCCACCTAAATTGGGAGTGAAACTTTTTATTCCAAATCATATGAAACTTCCATTA
ATTTTCACAAATCCAAACATTCATACATATAGATTGCATTCAGGACTTGCTGGTGGTGAT
ATTAGCGTATATGAGTTTATGATGGAAAGTATGCTATGTTACACTATTCCGCAACAACTC
TTATCAATTTGGATAATGCGCGAGAAAGAGTTGCTGCAAGAGATAAGTGCAATGGGTGAA
TTAGGTGGTGAATGGAAAAATAAACAATTAGAGTTACTTGATGCGCATCTACGCTTATTA
AGAGATTATTCACAAAGTAAGCAAAATTTGCAACATCACAATGGGCGCGGTGGGAAATTT
TTCAAGCCCTCTGCGAAACGAAATGATGAGACTTTGGAATTTGCGCCAATTAATTTGCAC
CTACAACGGATGGTAGCACACAATGATACGTTGAAAAAATCTGGTTGTTTAGATGTTGTC
ACAGTTGGTGCATTTACAAGACATACGGGTAAACAAAAGACTGGCGGACTTATAAAGCTA
CTTCATCAAATAAAAGATACGCCAACAAAAACTGAACAAGTACAGCATAAAGTTCAGGCA
GCTAATGATGTCGTGCAATCAATCAAACAATTGAGACGAGAAATTGTTGAAATTATGTCA
CAACTATTGCTTTTGGCAAAAACTAAATCAACTAAAAACATGCTTCCACTTTGCAATGAA
ATGATGATTAAGACACGTGCACTATTAAACATTTGGGAGCCTTCATTGGTAGAAGAAGCA
TTTCGATTTATCGAACAGCATCGAATAATTGATGAACCTGACAATACAATTATGCCATTA
TCTCCATTTAAAAAAATTACACAGCAGCTGTGTGCTTTAGACTTGAAAAGTCCAGAACTT
GAAGATTTTGCAACACCCAATGGACCACAACCAGATCTATGGCCACAACAACAAAAAATT
CCTAAATCTGATTCTAAAAATTTCATGAAAGCAAAATCTCCTTCTGCTACTGATCTAAAC
GTGATTGCTAATGTTCAGAATGCAGTTCAGTCGTATCAAAATTTTAATTCAAGCGAAAAA
ATGTCAATGTCACTCCCACCTGTTTTTACTACATCGGGACAAATTAAAGAAAATGTGCAT
GAATTAAGATTTAGTGAGACACATTTTGATGTAAATGGTGATGTATCGTCAGAAAATAGT
CATGAAAATGGAAAAGAAGTTAAAGAGAAGGAAGAAGAAGAAAGTGAAATATCATCTCTT
ACATCAGATCAGTTACTAGAAAGTAAGAATGAATTGCTATCAAGTCTTTATGATGAGAAT
GGTTATCTAATTGAAAACACATCAATCGTTTTAAATCATAATGGTGCTTTTCTTGATACT
AAATTGTGTCATAATTCGGACTTTTATCGACCTTCTGAAGAACCAGAGCCATTAGATTTG
ACACAATTAAATATTGAAGCGAGTGTTATGTGTTTAGTGAGCAAGGTCAAATTTTTATGT
GGTAGATGTGGCTCACCTGCAATTCGTCTTCGTAATCCTAGAAATTCAATTTCATCACTC
AAACGTGATTCTGAATCAGTCGTGACAAGTCAACCGACGGGTTCAAATGAAAATGGAAAT
AGAAATTCAACATCTTCGATTACGGCGCTAACAAATGGAAGCAATAAGACGCCGAATATG
CCGAGTAAAGATCTAAATTTAGCATTAACAGAGGCAGTGGGAGAGGTTACGAGAAAGGTG
AAAAAGGGCAATAAATTTACTGATGGATTAGATTTATCATTGACAACCGATTGGGCGAGT
GAATTACGACCGTCAATGAAAAAATTGAGGCAAGCGATGGATGGTTTACTGAAAACTGTA
CGTCTTATACATTCAGTGCAGCGATTACATCAAGATACGAAGAAAATCACATCAAATTTG
GCTATTATGTATCGTCGCGATGTTTGCTTTTCACAAGCTCTCACAACACTTATTACAGCA
TTAATGGCAAAATTTTGGGGAACAAATATATCAGAGCATTATATCAATGTCATCTGTGCT
CTCGGTCCATTGGTCTACTTTGAAGGATATTTATCGTTTTATGGAAGTGAATGGGATTTT
TGGTCCGATATGAATATTGCAATCGAAGATTTATCGACAGTCAATTTCACACTTGTACGA
CACAATACAAAAGCAATGCCTATGCCAAAAGTTAGTGGTTCGCGTCAATCTATTGTGGTT
TATTTGCCAGTACCAGATTACGTTTACGCTTTACTGCCACCATCGAATGGTCAATCGCCA
TTGAATCGTGATCAAATTACTTTTAAAGTGACACCTGTTTTCTTCAATATTGGAATAAAT
GAAATGGCAACATTAGCTGAATCACTAGGATATTGTAAAGAACAACATCGTTCGAATTTT
GATAATTTTGATCGACTTAAACGTTATCATATCATGTATAAGAAAATACCTATTCCTGAA
CCTAAAAGTAATGATAATTCACCTGGGAAAAATTATTTCATTCAAACACAATCGACAGTA
AAAGATAATGTTGTGTCGGAACAGATTGTGACAAATATGTTGGATAAAATGGAAGAATTA
TTGAGAGTGAATAGCTCTAAGAATGTAAAAGTACTCCATGTAGCAGAAGATATTACAAGA
GCACTCAATGGATTAAGAGTCACTTCATGTAAGAGTGCTAAAGATCGTACTGGCATGGCA
GTGACATTGGAGCAAGCGAGAATTTTGCAACAAGAATTTCATCTGCCAGCAGGAAATCTT
CAAAATGTTCTTGATGTAATGCGATCAGAGGGTACTCGTCTTGATAATACTTTCAAGAAC
ATTTGCAGACGCAAGTATGCATTTAATTTGCCTCAAGTTCTCGCACTTCCACCACTTTAT
CGTCCTCCGACAGCTTCATTTGGAAAAGCACAAACTTAA
>g13843.t2 Gene=g13843 Length=1292
MRFNVKEVRELATQHKCEKEGNLFFRERQEGFFRKAEVSSQRWCKLRGNLLFYFKTNDQF
SEPAGVIVLEKYRVTIPNEASFSNSENFEGFPFFIEFEDGLNQRLGATTEQERNEWVQAL
KMAGYDLMRAQLQYLREQIEKRRASHKMDVDVDMHRLQTGNNIDFSEVPICESAISCDNL
ICDAYGKPPNASIVVQVTAPNGGGGWIKYGRTEVIERSSNPQFLCTIVFRASDGLNAKTM
IRFTAYDVREKVSQTAVPLGFAEISLGVIQDTARLRIPIGSQNNTVGFITIVTFTPEHDK
KLRSPAKVNEHQSVGHRRSQSLPPKLGVKLFIPNHMKLPLIFTNPNIHTYRLHSGLAGGD
ISVYEFMMESMLCYTIPQQLLSIWIMREKELLQEISAMGELGGEWKNKQLELLDAHLRLL
RDYSQSKQNLQHHNGRGGKFFKPSAKRNDETLEFAPINLHLQRMVAHNDTLKKSGCLDVV
TVGAFTRHTGKQKTGGLIKLLHQIKDTPTKTEQVQHKVQAANDVVQSIKQLRREIVEIMS
QLLLLAKTKSTKNMLPLCNEMMIKTRALLNIWEPSLVEEAFRFIEQHRIIDEPDNTIMPL
SPFKKITQQLCALDLKSPELEDFATPNGPQPDLWPQQQKIPKSDSKNFMKAKSPSATDLN
VIANVQNAVQSYQNFNSSEKMSMSLPPVFTTSGQIKENVHELRFSETHFDVNGDVSSENS
HENGKEVKEKEEEESEISSLTSDQLLESKNELLSSLYDENGYLIENTSIVLNHNGAFLDT
KLCHNSDFYRPSEEPEPLDLTQLNIEASVMCLVSKVKFLCGRCGSPAIRLRNPRNSISSL
KRDSESVVTSQPTGSNENGNRNSTSSITALTNGSNKTPNMPSKDLNLALTEAVGEVTRKV
KKGNKFTDGLDLSLTTDWASELRPSMKKLRQAMDGLLKTVRLIHSVQRLHQDTKKITSNL
AIMYRRDVCFSQALTTLITALMAKFWGTNISEHYINVICALGPLVYFEGYLSFYGSEWDF
WSDMNIAIEDLSTVNFTLVRHNTKAMPMPKVSGSRQSIVVYLPVPDYVYALLPPSNGQSP
LNRDQITFKVTPVFFNIGINEMATLAESLGYCKEQHRSNFDNFDRLKRYHIMYKKIPIPE
PKSNDNSPGKNYFIQTQSTVKDNVVSEQIVTNMLDKMEELLRVNSSKNVKVLHVAEDITR
ALNGLRVTSCKSAKDRTGMAVTLEQARILQQEFHLPAGNLQNVLDVMRSEGTRLDNTFKN
ICRRKYAFNLPQVLALPPLYRPPTASFGKAQT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g13843.t2 | Gene3D | G3DSA:2.30.29.30 | - | 4 | 124 | 1.5E-13 |
| 9 | g13843.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 709 | 742 | - |
| 8 | g13843.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 719 | 737 | - |
| 7 | g13843.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 834 | 864 | - |
| 2 | g13843.t2 | PANTHER | PTHR12187:SF11 | AGAP000124-PA | 1 | 1292 | 8.3E-279 |
| 3 | g13843.t2 | PANTHER | PTHR12187 | AGAP000124-PA | 1 | 1292 | 8.3E-279 |
| 1 | g13843.t2 | Pfam | PF00169 | PH domain | 18 | 123 | 1.2E-7 |
| 11 | g13843.t2 | ProSiteProfiles | PS50003 | PH domain profile. | 16 | 125 | 10.918 |
| 6 | g13843.t2 | SMART | SM00233 | PH_update | 17 | 127 | 2.7E-10 |
| 4 | g13843.t2 | SUPERFAMILY | SSF50729 | PH domain-like | 14 | 134 | 1.9E-16 |
| 5 | g13843.t2 | SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 175 | 284 | 2.07E-7 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016316 | phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K01109 (inositol polyphosphate-4-phosphatase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
